Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| TraesCS1A01G190800.1 | |
| TraesCS1B01G206000.1 | |
| TraesCS1D01G194800.2 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G37890.1 | TraesCS1A01G190800.1 | AT5G65940.1 | 21798944 |
| AT5G37890.1 | TraesCS1B01G206000.1 | AT5G65940.1 | 21798944 |
| AT5G37890.1 | TraesCS1D01G194800.2 | AT5G65940.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1A01G060800.1 | Wheat | nucleus | 77.56 | 88.93 |
| HORVU1Hr1G012490.3 | Barley | nucleus | 80.4 | 85.24 |
| TraesCS3D01G028800.1 | Wheat | nucleus | 34.66 | 57.01 |
| TraesCS3D01G029700.1 | Wheat | cytosol, mitochondrion, nucleus | 43.75 | 54.04 |
| TraesCS3D01G029000.1 | Wheat | cytosol | 42.61 | 53.19 |
| TraesCS3D01G029400.1 | Wheat | nucleus | 68.75 | 52.72 |
| TraesCS3D01G029600.1 | Wheat | nucleus | 49.72 | 52.24 |
| TraesCS3D01G029300.1 | Wheat | nucleus | 46.31 | 47.94 |
| TraesCS3D01G504900.1 | Wheat | nucleus | 28.69 | 36.86 |
| TraesCS3D01G031300.1 | Wheat | nucleus | 27.56 | 35.4 |
| TraesCS3D01G030300.1 | Wheat | nucleus | 28.98 | 34.11 |
| CDY11709 | Canola | nucleus | 15.34 | 32.73 |
| TraesCS3D01G015600.1 | Wheat | cytosol | 24.15 | 28.62 |
| CDY36209 | Canola | plastid | 16.76 | 27.96 |
| Solyc03g036460.1.1 | Tomato | cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole | 16.76 | 26.7 |
| CDY52473 | Canola | nucleus | 21.31 | 26.41 |
| CDX96140 | Canola | cytosol, nucleus, plastid | 26.14 | 26.36 |
| CDY01699 | Canola | nucleus, plastid | 21.02 | 26.24 |
| CDY12498 | Canola | nucleus | 20.17 | 26.1 |
| Bra004174.1-P | Field mustard | nucleus | 26.14 | 26.06 |
| CDX99687 | Canola | nucleus | 20.74 | 25.8 |
| Bra012354.1-P | Field mustard | cytosol | 19.89 | 25.74 |
| CDY25763 | Canola | nucleus | 19.89 | 25.74 |
| Bra025434.1-P | Field mustard | nucleus | 20.74 | 25.7 |
| Bra004401.1-P | Field mustard | cytosol, mitochondrion, nucleus | 19.6 | 25.65 |
| AT1G66620.1 | Thale cress | nucleus | 22.73 | 25.56 |
| PGSC0003DMT400043047 | Potato | cytosol | 13.35 | 25.54 |
| Bra000425.1-P | Field mustard | nucleus | 19.89 | 24.73 |
| Bra018266.1-P | Field mustard | plastid | 20.17 | 24.57 |
| CDY10787 | Canola | plastid | 20.17 | 24.57 |
| VIT_14s0006g01870.t01 | Wine grape | cytosol | 13.92 | 24.5 |
| TraesCS3D01G020800.1 | Wheat | cytosol, nucleus, plastid | 19.03 | 24.28 |
| CDX95911 | Canola | cytosol, nucleus, plastid | 20.17 | 24.15 |
| AT1G66630.1 | Thale cress | cytosol | 20.74 | 24.09 |
| AT5G37870.1 | Thale cress | nucleus | 19.03 | 23.84 |
| AT5G37890.1 | Thale cress | nucleus | 19.03 | 23.43 |
| Bra022858.1-P | Field mustard | nucleus | 20.17 | 23.36 |
| TraesCS3D01G018100.1 | Wheat | cytosol | 17.61 | 23.13 |
| AT5G37900.1 | Thale cress | nucleus | 15.62 | 22.82 |
| CDY01756 | Canola | cytosol, nucleus, plastid | 19.03 | 22.56 |
| CDY47873 | Canola | nucleus | 20.74 | 22.53 |
| Bra028395.1-P | Field mustard | nucleus | 20.74 | 22.53 |
| Bra004402.1-P | Field mustard | nucleus | 20.17 | 22.4 |
| CDX83363 | Canola | cytosol, nucleus, plasma membrane | 11.36 | 22.35 |
| CDY27008 | Canola | nucleus | 20.74 | 22.19 |
| KRH42263 | Soybean | nucleus | 20.17 | 22.19 |
| AT1G66610.1 | Thale cress | nucleus | 22.73 | 21.86 |
| AT5G37910.1 | Thale cress | nucleus | 17.05 | 21.74 |
| AT1G66650.1 | Thale cress | nucleus | 20.17 | 21.58 |
| KRH58384 | Soybean | nucleus | 19.6 | 21.56 |
| TraesCS1D01G134000.1 | Wheat | mitochondrion, nucleus, peroxisome, plasma membrane | 15.34 | 21.43 |
| Solyc03g034460.2.1 | Tomato | nucleus | 21.88 | 21.39 |
| TraesCS4D01G356400.2 | Wheat | nucleus | 20.17 | 21.13 |
| CDY01695 | Canola | nucleus | 18.47 | 21.04 |
| PGSC0003DMT400043050 | Potato | nucleus | 22.73 | 21.0 |
| AT5G62800.1 | Thale cress | nucleus | 20.74 | 20.98 |
| TraesCS4D01G164700.1 | Wheat | nucleus | 17.9 | 20.93 |
| TraesCS2D01G131700.1 | Wheat | cytosol | 17.9 | 20.93 |
| AT5G37930.1 | Thale cress | nucleus | 20.74 | 20.92 |
| Solyc03g042550.1.1 | Tomato | nucleus | 21.31 | 20.83 |
| TraesCS5D01G504400.1 | Wheat | cytosol | 11.65 | 20.4 |
| TraesCS1D01G102900.1 | Wheat | nucleus | 21.88 | 20.16 |
| Solyc03g034450.2.1 | Tomato | nucleus | 21.88 | 19.64 |
| CDY70665 | Canola | nucleus | 17.61 | 19.14 |
| TraesCS3D01G018300.1 | Wheat | mitochondrion | 17.33 | 18.89 |
| TraesCS3D01G165600.1 | Wheat | cytoskeleton, nucleus, plasma membrane | 17.05 | 18.46 |
| Bra019710.1-P | Field mustard | nucleus | 17.9 | 18.42 |
| Bra004176.1-P | Field mustard | nucleus | 17.61 | 18.4 |
| AT1G66660.2 | Thale cress | nucleus | 18.18 | 18.39 |
| TraesCS7D01G340900.1 | Wheat | cytosol, nucleus, peroxisome | 17.61 | 18.18 |
| Solyc03g042520.1.1 | Tomato | nucleus | 15.91 | 18.06 |
| CDX96138 | Canola | nucleus | 17.33 | 17.94 |
| CDY36211 | Canola | nucleus | 17.61 | 17.17 |
| TraesCS2D01G564800.1 | Wheat | nucleus, plastid | 17.61 | 16.53 |
| TraesCS2D01G600200.1 | Wheat | nucleus | 16.76 | 16.16 |
| CDY01757 | Canola | cytosol | 2.27 | 15.09 |
| CDY01758 | Canola | cytosol | 13.92 | 11.21 |
Protein Annotations
| MapMan:19.2.2.1.5.3.5 | Gene3D:3.30.40.10 | InterPro:7-in-absentia-prot_TRAF-dom | ncoils:Coil | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006511 |
| GO:GO:0007275 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008270 | GO:GO:0009056 | GO:GO:0009987 |
| GO:GO:0019538 | InterPro:IPR008974 | InterPro:IPR013010 | InterPro:IPR013083 | PFAM:PF03145 | PFscan:PS51081 |
| PANTHER:PTHR10315 | PANTHER:PTHR10315:SF43 | InterPro:SINA-like | SUPFAM:SSF49599 | InterPro:TRAF-like | EnsemblPlantsGene:TraesCS1D01G061700 |
| EnsemblPlants:TraesCS1D01G061700.1 | InterPro:Znf_RING/FYVE/PHD | InterPro:Znf_SIAH | SEG:seg | : | : |
Description
No Description!
Coordinates
chr1D:-:41756600..41757926
Molecular Weight (calculated)
39352.3 Da
IEP (calculated)
4.143
GRAVY (calculated)
-0.700
Length
352 amino acids
Sequence
(BLAST)
(BLAST)
001: MAINGSSSSK RKVEAQREGE SSSKKLNVTV GLETLDCTIC SAPLRPPIFQ CSVGHFICSS CHESEDQLDH KCPTCSVKTS YKRCFGMEHV VQSVTVACSN
101: DKYGCAEKFT YYKKEEHEKA CPNAPCFCPE PGCEFAGPTK MLLDHFATQH KCPSTNLPDS GTVSLRLQPG LHVLQCIDTS YFFLLSMASK PFGHAISVVC
201: VQPNVTEFRF ACNMSYDCLT TGCCGSTSCH IRSSSLSDGL PTVYDLILPK GKVSDDENGI MLKATIHRQP LGLSRSCFRE LGPTPALEQR PDTCDVEEKE
301: EEEKEDHEEE EEDDNEEELD DDHEDEDDDE EEEEDQEEEL DDEEEEEEMD ED
101: DKYGCAEKFT YYKKEEHEKA CPNAPCFCPE PGCEFAGPTK MLLDHFATQH KCPSTNLPDS GTVSLRLQPG LHVLQCIDTS YFFLLSMASK PFGHAISVVC
201: VQPNVTEFRF ACNMSYDCLT TGCCGSTSCH IRSSSLSDGL PTVYDLILPK GKVSDDENGI MLKATIHRQP LGLSRSCFRE LGPTPALEQR PDTCDVEEKE
301: EEEKEDHEEE EEDDNEEELD DDHEDEDDDE EEEEDQEEEL DDEEEEEEMD ED
001: MVGVLLSERN GSQKRHCSSI SSDDGRKRVD KTRSAMLTDL DILDCPICYQ ALKIPVFQCG NGHLACSSCC PKLRNKCPAC ALPVGHIRCR AMERVLESVL
101: VPCRYADLGC TKTIYYGRES THEKICNFSP CSCPVQGCNY TGSYKDLYEH YDLTHSTGST AYSFNGVSYI AAMMFISDKI LIERVYEKKL LFVVQCFEEP
201: CGVYVSVSCI APSAPEVGEF SYGLLYTTWE GVTMTYQSPK VKKVLKVSSQ RPKDSFMLIP HSLLCGPLLG MMLCINELKQ M
101: VPCRYADLGC TKTIYYGRES THEKICNFSP CSCPVQGCNY TGSYKDLYEH YDLTHSTGST AYSFNGVSYI AAMMFISDKI LIERVYEKKL LFVVQCFEEP
201: CGVYVSVSCI APSAPEVGEF SYGLLYTTWE GVTMTYQSPK VKKVLKVSSQ RPKDSFMLIP HSLLCGPLLG MMLCINELKQ M
Arabidopsis Description
Putative E3 ubiquitin-protein ligase SINA-like 6 [Source:UniProtKB/Swiss-Prot;Acc:Q9FKD9]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.