Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
- cytosol 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc03g036460.1.1 | Tomato | cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole | 89.67 | 74.66 |
| Solyc03g042550.1.1 | Tomato | nucleus | 89.13 | 45.56 |
| Solyc03g034460.2.1 | Tomato | nucleus | 88.59 | 45.28 |
| PGSC0003DMT400043050 | Potato | nucleus | 91.85 | 44.36 |
| Solyc03g042520.1.1 | Tomato | nucleus | 72.83 | 43.23 |
| CDY01757 | Canola | cytosol | 7.61 | 26.42 |
| CDX83363 | Canola | cytosol, nucleus, plasma membrane | 22.28 | 22.91 |
| TraesCS3B01G032300.1 | Wheat | cytosol | 23.37 | 21.5 |
| AT5G37900.1 | Thale cress | nucleus | 27.17 | 20.75 |
| KRH42263 | Soybean | nucleus | 34.78 | 20.0 |
| KRH58384 | Soybean | nucleus | 33.15 | 19.06 |
| TraesCS3A01G062700.1 | Wheat | nucleus | 28.26 | 18.91 |
| CDY01699 | Canola | nucleus, plastid | 28.26 | 18.44 |
| TraesCS3B01G074800.1 | Wheat | cytosol | 27.72 | 18.41 |
| Bra004401.1-P | Field mustard | cytosol, mitochondrion, nucleus | 26.63 | 18.22 |
| TraesCS3A01G031100.1 | Wheat | cytosol | 26.63 | 18.22 |
| AT5G37910.1 | Thale cress | nucleus | 26.63 | 17.75 |
| TraesCS3B01G053500.1 | Wheat | cytosol | 27.17 | 17.73 |
| TraesCS3B01G031200.1 | Wheat | nucleus | 27.72 | 17.47 |
| HORVU3Hr1G004860.1 | Barley | cytosol | 23.91 | 17.46 |
| TraesCS3B01G053400.1 | Wheat | cytosol, nucleus, plastid | 27.72 | 17.41 |
| TraesCS3D01G028800.1 | Wheat | nucleus | 20.11 | 17.29 |
| TraesCS1A01G070000.1 | Wheat | plastid | 22.83 | 17.28 |
| HORVU4Hr1G056260.1 | Barley | nucleus | 25.54 | 17.09 |
| TraesCS3A01G031200.1 | Wheat | cytosol | 24.46 | 16.79 |
| TraesCS3A01G048300.1 | Wheat | nucleus | 25.0 | 16.79 |
| TraesCS3D01G504900.1 | Wheat | nucleus | 25.0 | 16.79 |
| TraesCS3A01G030800.1 | Wheat | cytosol | 25.0 | 16.73 |
| CDY12498 | Canola | nucleus | 24.46 | 16.54 |
| KXG32008 | Sorghum | cytosol, nucleus, plastid | 23.91 | 16.54 |
| CDY01756 | Canola | cytosol, nucleus, plastid | 26.63 | 16.5 |
| HORVU3Hr1G005260.1 | Barley | cytosol | 8.15 | 16.48 |
| TraesCS3B01G053000.1 | Wheat | cytosol | 25.0 | 16.37 |
| CDX95911 | Canola | cytosol, nucleus, plastid | 26.09 | 16.33 |
| PGSC0003DMT400060943 | Potato | cytosol | 21.74 | 16.33 |
| PGSC0003DMT400060947 | Potato | cytosol | 21.74 | 16.33 |
| TraesCS3B01G052800.1 | Wheat | cytosol | 25.0 | 16.31 |
| CDY25763 | Canola | nucleus | 23.91 | 16.18 |
| TraesCS3D01G031300.1 | Wheat | nucleus | 23.91 | 16.06 |
| AT1G66620.1 | Thale cress | nucleus | 27.17 | 15.97 |
| TraesCS3D01G029000.1 | Wheat | cytosol | 24.46 | 15.96 |
| Bra018266.1-P | Field mustard | plastid | 25.0 | 15.92 |
| CDY10787 | Canola | plastid | 25.0 | 15.92 |
| TraesCS3B01G560800.1 | Wheat | nucleus | 23.91 | 15.83 |
| Bra012354.1-P | Field mustard | cytosol | 23.37 | 15.81 |
| Bra022858.1-P | Field mustard | nucleus | 26.09 | 15.79 |
| KXG37942 | Sorghum | cytosol, nucleus, plastid | 22.83 | 15.79 |
| TraesCS3B01G033800.1 | Wheat | nucleus | 23.37 | 15.69 |
| AT5G37870.1 | Thale cress | nucleus | 23.91 | 15.66 |
| Bra000425.1-P | Field mustard | nucleus | 23.91 | 15.55 |
| CDX99687 | Canola | nucleus | 23.91 | 15.55 |
| CDY52473 | Canola | nucleus | 23.91 | 15.49 |
| TraesCS3D01G029700.1 | Wheat | cytosol, mitochondrion, nucleus | 23.91 | 15.44 |
| OQU86453 | Sorghum | cytosol | 17.93 | 15.42 |
| TraesCS3B01G050100.1 | Wheat | cytosol | 22.83 | 15.33 |
| TraesCS1A01G060800.1 | Wheat | nucleus | 25.54 | 15.31 |
| KXG32009 | Sorghum | nucleus | 24.46 | 15.2 |
| Bra004402.1-P | Field mustard | nucleus | 26.09 | 15.14 |
| Bra025434.1-P | Field mustard | nucleus | 23.37 | 15.14 |
| TraesCS3B01G032100.1 | Wheat | cytosol | 23.37 | 15.14 |
| HORVU3Hr1G005320.1 | Barley | nucleus | 21.74 | 15.09 |
| TraesCS3B01G050900.1 | Wheat | cytosol | 23.91 | 15.07 |
| TraesCS3D01G030300.1 | Wheat | nucleus | 24.46 | 15.05 |
| AT5G37890.1 | Thale cress | nucleus | 23.37 | 15.04 |
| HORVU2Hr1G118560.2 | Barley | nucleus | 22.83 | 15.0 |
| HORVU3Hr1G004950.1 | Barley | nucleus | 24.46 | 15.0 |
| KXG37941 | Sorghum | cytosol | 22.83 | 15.0 |
| TraesCS3A01G030600.1 | Wheat | nucleus | 22.83 | 14.89 |
| TraesCS3D01G015600.1 | Wheat | cytosol | 23.91 | 14.81 |
| OQU78944 | Sorghum | nucleus | 26.09 | 14.72 |
| Zm00001d041049_P001 | Maize | nucleus | 26.09 | 14.68 |
| TraesCS3B01G050200.1 | Wheat | nucleus | 19.57 | 14.57 |
| CDY01695 | Canola | nucleus | 24.46 | 14.56 |
| CDY11709 | Canola | nucleus | 13.04 | 14.55 |
| TraesCS5A01G531400.2 | Wheat | nucleus | 26.09 | 14.5 |
| TraesCS3A01G030100.1 | Wheat | nucleus | 23.37 | 14.48 |
| TraesCS3B01G054400.1 | Wheat | cytosol | 23.37 | 14.48 |
| TraesCS3B01G033700.1 | Wheat | nucleus | 22.83 | 14.38 |
| TraesCSU01G045900.1 | Wheat | cytosol | 23.37 | 14.38 |
| CDX96140 | Canola | cytosol, nucleus, plastid | 27.17 | 14.33 |
| AT1G66650.1 | Thale cress | nucleus | 25.54 | 14.29 |
| CDY27008 | Canola | nucleus | 25.54 | 14.29 |
| TraesCS3B01G028900.1 | Wheat | cytosol | 23.37 | 14.29 |
| Bra028395.1-P | Field mustard | nucleus | 25.0 | 14.2 |
| CDY47873 | Canola | nucleus | 25.0 | 14.2 |
| AT1G66630.1 | Thale cress | cytosol | 23.37 | 14.19 |
| Bra004174.1-P | Field mustard | nucleus | 27.17 | 14.16 |
| HORVU3Hr1G004880.2 | Barley | nucleus | 26.09 | 14.16 |
| TraesCS3A01G062800.1 | Wheat | nucleus | 22.28 | 14.14 |
| TraesCS3D01G029600.1 | Wheat | nucleus | 25.54 | 14.03 |
| TraesCS3B01G050700.1 | Wheat | nucleus | 23.37 | 14.01 |
| TraesCS4D01G356400.2 | Wheat | nucleus | 25.54 | 13.99 |
| AT5G62800.1 | Thale cress | nucleus | 26.09 | 13.79 |
| PGSC0003DMT400054414 | Potato | cytosol | 22.28 | 13.44 |
| TraesCS4B01G363200.1 | Wheat | nucleus | 23.91 | 13.41 |
| TraesCS2A01G446400.1 | Wheat | cytosol, nucleus, plastid | 19.57 | 13.38 |
| Bra004176.1-P | Field mustard | nucleus | 24.46 | 13.35 |
| TraesCS1D01G061700.1 | Wheat | nucleus | 25.54 | 13.35 |
| HORVU1Hr1G012490.3 | Barley | nucleus | 23.91 | 13.25 |
| CDX96138 | Canola | nucleus | 24.46 | 13.24 |
| HORVU0Hr1G006120.2 | Barley | cytosol, nucleus, plastid | 20.11 | 13.21 |
| EES17728 | Sorghum | cytosol, mitochondrion, nucleus | 23.37 | 13.15 |
| TraesCS3B01G052700.1 | Wheat | nucleus | 17.93 | 13.04 |
| CDY36211 | Canola | nucleus | 25.54 | 13.02 |
| HORVU3Hr1G004890.1 | Barley | nucleus | 21.2 | 13.0 |
| PGSC0003DMT400081996 | Potato | cytosol | 21.74 | 12.99 |
| AT5G37930.1 | Thale cress | nucleus | 24.46 | 12.89 |
| HORVU4Hr1G087120.3 | Barley | nucleus | 25.0 | 12.85 |
| PGSC0003DMT400023575 | Potato | cytosol | 21.74 | 12.74 |
| PGSC0003DMT400050427 | Potato | cytosol | 21.74 | 12.7 |
| TraesCS3D01G029300.1 | Wheat | nucleus | 23.37 | 12.65 |
| HORVU3Hr1G005270.1 | Barley | nucleus | 23.37 | 12.61 |
| PGSC0003DMT400010948 | Potato | cytosol | 21.2 | 12.58 |
| PGSC0003DMT400048586 | Potato | mitochondrion | 21.74 | 12.46 |
| TraesCS3A01G032200.1 | Wheat | nucleus | 22.83 | 12.35 |
| TraesCS3B01G052400.1 | Wheat | nucleus | 22.83 | 12.35 |
| EES17731 | Sorghum | nucleus | 22.83 | 12.14 |
| TraesCS5A01G228300.1 | Wheat | cytosol | 20.65 | 12.06 |
| AT1G66610.1 | Thale cress | nucleus | 23.91 | 12.02 |
| PGSC0003DMT400018049 | Potato | nucleus | 21.74 | 12.01 |
| VIT_14s0006g01870.t01 | Wine grape | cytosol | 13.04 | 12.0 |
| Bra019710.1-P | Field mustard | nucleus | 22.28 | 11.99 |
| EES00387 | Sorghum | nucleus | 20.65 | 11.91 |
| OQU77422 | Sorghum | cytosol | 18.48 | 11.89 |
| HORVU2Hr1G118840.1 | Barley | plastid | 23.91 | 11.86 |
| CDY36209 | Canola | plastid | 13.59 | 11.85 |
| TraesCS2A01G589200.1 | Wheat | nucleus, plastid | 23.91 | 11.8 |
| TraesCS2B01G594500.1 | Wheat | nucleus, plastid | 23.91 | 11.73 |
| TraesCS2D01G564800.1 | Wheat | nucleus, plastid | 23.91 | 11.73 |
| CDY70665 | Canola | nucleus | 20.65 | 11.73 |
| PGSC0003DMT400000649 | Potato | cytosol | 21.2 | 11.61 |
| TraesCS2A01G586400.1 | Wheat | nucleus | 22.83 | 11.51 |
| TraesCSU01G021700.1 | Wheat | nucleus | 22.83 | 11.51 |
| OQU77425 | Sorghum | nucleus | 23.37 | 11.44 |
| OQU77414 | Sorghum | mitochondrion, nucleus | 21.74 | 11.3 |
| TraesCS2D01G600200.1 | Wheat | nucleus | 22.28 | 11.23 |
| HORVU0Hr1G006130.1 | Barley | nucleus | 20.11 | 11.21 |
| TraesCS3A01G031300.1 | Wheat | cytosol | 16.85 | 11.03 |
| TraesCS1D01G102900.1 | Wheat | nucleus | 22.83 | 10.99 |
| TraesCS3D01G029400.1 | Wheat | nucleus | 27.17 | 10.89 |
| TraesCS3B01G052300.1 | Wheat | nucleus | 27.17 | 10.78 |
| TraesCS3A01G032100.1 | Wheat | nucleus | 26.63 | 10.75 |
| KXG21322 | Sorghum | nucleus | 21.74 | 10.7 |
| TraesCSU01G231400.1 | Wheat | nucleus | 20.11 | 10.69 |
| AT1G66660.2 | Thale cress | nucleus | 19.57 | 10.34 |
| KXG32014 | Sorghum | nucleus | 11.41 | 9.55 |
| TraesCS3B01G031100.1 | Wheat | nucleus | 19.02 | 8.64 |
| EES02574 | Sorghum | nucleus | 20.11 | 8.26 |
| EES17735 | Sorghum | mitochondrion | 20.11 | 8.24 |
| Os05t0152700-00 | Rice | cytosol, extracellular | 3.8 | 7.07 |
| CDY01758 | Canola | cytosol | 8.15 | 3.43 |
Protein Annotations
| Gene3D:3.30.40.10 | MapMan:35.1 | InterPro:7-in-absentia-prot_TRAF-dom | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006464 | GO:GO:0006511 |
| GO:GO:0007275 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008270 | GO:GO:0009056 | GO:GO:0009987 |
| GO:GO:0016567 | GO:GO:0019538 | GO:GO:0046872 | InterPro:IPR008974 | InterPro:IPR013010 | InterPro:IPR013083 |
| UniProt:M1BDZ4 | PFAM:PF03145 | EnsemblPlantsGene:PGSC0003DMG402016693 | PGSC:PGSC0003DMG402016693 | EnsemblPlants:PGSC0003DMT400043047 | PFscan:PS51081 |
| PANTHER:PTHR10315 | PANTHER:PTHR10315:SF43 | InterPro:SINA-like | SUPFAM:SSF49599 | InterPro:TRAF-like | UniParc:UPI0002959338 |
| InterPro:Znf_RING/FYVE/PHD | InterPro:Znf_SIAH | : | : | : | : |
Description
Ubiquitin-protein ligase [Source:PGSC_GENE;Acc:PGSC0003DMG402016693]
Coordinates
chr3:+:5467673..5469199
Molecular Weight (calculated)
20760.9 Da
IEP (calculated)
7.750
GRAVY (calculated)
-0.207
Length
184 amino acids
Sequence
(BLAST)
(BLAST)
001: MENVLESLKV SCVNNRYGCK EILSYSKNTE HENACIYVPC LCPSHGCDFI GTSAKVYAHF SDKHASSAEH IFFNAVHPIY IEKDQRYKIL QMRTEGILFI
101: INHASDRGGS AINIICVGPA RQKRRFSYKL VVTDGESSFK LESVAECIPN WSENSPLKKF LVVPRDVVNS SAPLKLNVFI EEKE
101: INHASDRGGS AINIICVGPA RQKRRFSYKL VVTDGESSFK LESVAECIPN WSENSPLKKF LVVPRDVVNS SAPLKLNVFI EEKE
001: MVGALEALIS QGHGGERVAK RQRSATLLDL DILDCPICCE GLTCPIFQPM ENILESILVT CPNDMFGCTE SFLYGKKSTH EEECIFSLCS CPSLDCEYSG
101: RYEDLYDHYK LTHISNSYWT TNCFRSSIPY KAPMLISDKI QITRVYEKKI LFAVQCFRES CGVYVTVSCI APSAPEVGQF SYQISYTVDE HTMVYRSPQM
201: KRVRKVSFET PQENFMLIPH NLLRSELLDI KLSIVETSNQ E
101: RYEDLYDHYK LTHISNSYWT TNCFRSSIPY KAPMLISDKI QITRVYEKKI LFAVQCFRES CGVYVTVSCI APSAPEVGQF SYQISYTVDE HTMVYRSPQM
201: KRVRKVSFET PQENFMLIPH NLLRSELLDI KLSIVETSNQ E
Arabidopsis Description
TRAF-like superfamily protein [Source:TAIR;Acc:AT5G37900]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.