Subcellular Localization
min:
: max
Winner_takes_all: extracellular, cytosol
Predictor Summary:
Predictor Summary:
- extracellular 5
- endoplasmic reticulum 4
- vacuole 4
- plasma membrane 4
- golgi 4
- cytosol 3
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Os01t0765900-00 | |
| Os02t0530300-01 | |
| Os12t0264500-02 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G37890.1 | Os01t0765900-00 | AT2G27580.1 | 21798944 |
| AT5G37890.1 | Os02t0530300-01 | AT2G27580.1 | 21798944 |
| AT5G37890.1 | Os12t0264500-02 | AT5G65940.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY01757 | Canola | cytosol | 4.04 | 7.55 |
| PGSC0003DMT400043047 | Potato | cytosol | 7.07 | 3.8 |
| Os05t0152600-00 | Rice | mitochondrion | 19.19 | 3.7 |
| Os05t0152900-00 | Rice | nucleus | 14.14 | 3.5 |
| Solyc03g036460.1.1 | Tomato | cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole | 6.06 | 2.71 |
| Os01t0124900-00 | Rice | cytosol | 5.05 | 2.53 |
| Os01t0125000-00 | Rice | nucleus | 7.07 | 2.06 |
| Solyc03g042520.1.1 | Tomato | nucleus | 6.06 | 1.94 |
| Os01t0761900-00 | Rice | cytosol | 3.03 | 1.84 |
| PGSC0003DMT400043050 | Potato | nucleus | 7.07 | 1.84 |
| Solyc03g034450.2.1 | Tomato | nucleus | 7.07 | 1.79 |
| CDX83363 | Canola | cytosol, nucleus, plasma membrane | 3.03 | 1.68 |
| Solyc03g042550.1.1 | Tomato | nucleus | 6.06 | 1.67 |
| Solyc03g034460.2.1 | Tomato | nucleus | 6.06 | 1.67 |
| Os01t0123700-00 | Rice | cytosol, mitochondrion, nucleus | 5.05 | 1.66 |
| Os06t0311300-01 | Rice | plasma membrane | 4.04 | 1.6 |
| AT1G66620.1 | Thale cress | nucleus | 5.05 | 1.6 |
| CDY10787 | Canola | plastid | 4.04 | 1.38 |
| Bra018266.1-P | Field mustard | plastid | 4.04 | 1.38 |
| Os03t0356414-01 | Rice | cytosol | 4.04 | 1.33 |
| Os07t0659800-01 | Rice | cytosol | 4.04 | 1.32 |
| Os02t0128800-01 | Rice | cytosol | 4.04 | 1.3 |
| KRH58384 | Soybean | nucleus | 4.04 | 1.25 |
| KRH42263 | Soybean | nucleus | 4.04 | 1.25 |
| AT5G37900.1 | Thale cress | nucleus | 3.03 | 1.24 |
| CDX96140 | Canola | cytosol, nucleus, plastid | 4.04 | 1.15 |
| Os02t0293400-01 | Rice | cytosol, nucleus, peroxisome | 4.04 | 1.15 |
| Bra004174.1-P | Field mustard | nucleus | 4.04 | 1.13 |
| Bra004401.1-P | Field mustard | cytosol, mitochondrion, nucleus | 3.03 | 1.12 |
| Os05t0238200-01 | Rice | cytoskeleton, nucleus, peroxisome | 4.04 | 1.11 |
| AT5G37910.1 | Thale cress | nucleus | 3.03 | 1.09 |
| Os01t0125500-00 | Rice | mitochondrion | 3.03 | 1.07 |
| Bra000425.1-P | Field mustard | nucleus | 3.03 | 1.06 |
| Os01t0123800-00 | Rice | nucleus | 4.04 | 1.04 |
| Bra022858.1-P | Field mustard | nucleus | 3.03 | 0.99 |
| CDY70665 | Canola | nucleus | 3.03 | 0.93 |
| AT1G66650.1 | Thale cress | nucleus | 3.03 | 0.91 |
| Bra019710.1-P | Field mustard | nucleus | 3.03 | 0.88 |
| Os01t0234900-01 | Rice | cytoskeleton, nucleus, peroxisome | 3.03 | 0.86 |
| AT5G62800.1 | Thale cress | nucleus | 3.03 | 0.86 |
| AT1G66610.1 | Thale cress | nucleus | 3.03 | 0.82 |
| Bra012354.1-P | Field mustard | cytosol | 2.02 | 0.74 |
| CDY25763 | Canola | nucleus | 2.02 | 0.74 |
| CDY12498 | Canola | nucleus | 2.02 | 0.74 |
| AT5G37870.1 | Thale cress | nucleus | 2.02 | 0.71 |
| CDY01699 | Canola | nucleus, plastid | 2.02 | 0.71 |
| CDX99687 | Canola | nucleus | 2.02 | 0.71 |
| Bra025434.1-P | Field mustard | nucleus | 2.02 | 0.7 |
| CDY52473 | Canola | nucleus | 2.02 | 0.7 |
| AT5G37890.1 | Thale cress | nucleus | 2.02 | 0.7 |
| CDX95911 | Canola | cytosol, nucleus, plastid | 2.02 | 0.68 |
| CDY01756 | Canola | cytosol, nucleus, plastid | 2.02 | 0.67 |
| AT1G66630.1 | Thale cress | cytosol | 2.02 | 0.66 |
| CDY01695 | Canola | nucleus | 2.02 | 0.65 |
| Bra004402.1-P | Field mustard | nucleus | 2.02 | 0.63 |
| CDY47873 | Canola | nucleus | 2.02 | 0.62 |
| Bra028395.1-P | Field mustard | nucleus | 2.02 | 0.62 |
| CDY27008 | Canola | nucleus | 2.02 | 0.61 |
| CDY11709 | Canola | nucleus | 1.01 | 0.61 |
| Bra004176.1-P | Field mustard | nucleus | 2.02 | 0.59 |
| CDX96138 | Canola | nucleus | 2.02 | 0.59 |
| AT1G66660.2 | Thale cress | nucleus | 2.02 | 0.57 |
| AT5G37930.1 | Thale cress | nucleus | 2.02 | 0.57 |
| CDY36211 | Canola | nucleus | 2.02 | 0.55 |
| CDY36209 | Canola | plastid | 0.0 | 0.0 |
| CDY01758 | Canola | cytosol | 0.0 | 0.0 |
| VIT_14s0006g01870.t01 | Wine grape | cytosol | 0.0 | 0.0 |
Protein Annotations
| MapMan:35.2 | UniProt:A0A0P0WI76 | ProteinID:BAS92327.1 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006511 | GO:GO:0007275 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009056 | GO:GO:0009987 | GO:GO:0019538 | InterPro:IPR008974 |
| EnsemblPlantsGene:Os05g0152700 | EnsemblPlants:Os05t0152700-00 | PANTHER:PTHR10315 | PANTHER:PTHR10315:SF35 | InterPro:SINA-like | SUPFAM:SSF49599 |
| InterPro:TRAF-like | UniParc:UPI000393AEE6 | SEG:seg | : | : | : |
Description
TRAF-like domain containing protein. (Os05t0152700-00)
Coordinates
chr5:+:3042813..3043112
Molecular Weight (calculated)
10834.2 Da
IEP (calculated)
7.389
GRAVY (calculated)
-0.008
Length
99 amino acids
Sequence
(BLAST)
(BLAST)
1: MLNVTREALG RAISVLCIHP LAAAAAAKTM QCELELFVPL NGDDGVDGGQ LRRRHYQKSE FPLGCGDLAD HKTTFKFVVP RCVVGDDDEG GIRIRVRII
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.