Factsheet for Os06t0311300-01

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

extracellular 4
endoplasmic reticulum 4
vacuole 4
plasma membrane 6
golgi 4
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	nucleus, secretory
BaCelLo:	secretory
iPSORT:	secretory
MultiLoc:	plasma membrane
Plant-mPloc:	nucleus
PProwler:	secretory
TargetP:	secretory
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4D01G356400.2	Wheat	nucleus	67.6	50.3
TraesCS4B01G363200.1	Wheat	nucleus	65.6	50.0
TraesCS5A01G531400.2	Wheat	nucleus	65.6	49.55
Zm00001d041049_P001	Maize	nucleus	64.0	48.93
OQU78944	Sorghum	nucleus	62.4	47.85
HORVU4Hr1G087120.3	Barley	nucleus	67.6	47.21
Os01t0123700-00	Rice	cytosol, mitochondrion, nucleus	21.6	17.88
Os01t0124900-00	Rice	cytosol	13.6	17.17
Os01t0125000-00	Rice	nucleus	22.4	16.52
Os01t0125500-00	Rice	mitochondrion	18.4	16.37
Os02t0128800-01	Rice	cytosol	20.0	16.23
Os03t0356414-01	Rice	cytosol	18.8	15.61
Os07t0659800-01	Rice	cytosol	18.4	15.23
Os01t0123800-00	Rice	nucleus	22.4	14.51
Os01t0234900-01	Rice	cytoskeleton, nucleus, peroxisome	20.0	14.41
Os02t0293400-01	Rice	cytosol, nucleus, peroxisome	20.0	14.33
Os05t0152900-00	Rice	nucleus	22.8	14.25
Os05t0238200-01	Rice	cytoskeleton, nucleus, peroxisome	18.8	13.02
Os05t0152600-00	Rice	mitochondrion	22.8	11.09
Os01t0761900-00	Rice	cytosol	6.4	9.82
Os05t0152700-00	Rice	cytosol, extracellular	1.6	4.04

Protein Annotations

Gene3D:3.30.40.10	MapMan:35.1	InterPro:7-in-absentia-prot_TRAF-dom	UniProt:A0A0P0WW04	ProteinID:BAS97440.1	GO:GO:0003674
GO:GO:0003824	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006464	GO:GO:0006511	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152
GO:GO:0008270	GO:GO:0009056	GO:GO:0009987	GO:GO:0016567	GO:GO:0016740	GO:GO:0019538
GO:GO:0046872	GO:GO:0061630	InterPro:IPR008974	InterPro:IPR013010	InterPro:IPR013083	EnsemblPlantsGene:Os06g0311300
EnsemblPlants:Os06t0311300-01	PFAM:PF03145	PFscan:PS51081	PANTHER:PTHR10315	PANTHER:PTHR10315:SF32	InterPro:SINA-like
SUPFAM:SSF49599	InterPro:TRAF-like	UniParc:UPI000393A39C	InterPro:Znf_RING/FYVE/PHD	InterPro:Znf_SIAH	:

Description

Seven-in-absentia protein, sina domain containing protein. (Os06t0311300-01)

Coordinates

chr6:+:11867820..11870616

Molecular Weight (calculated)

28531.2 Da

IEP (calculated)

8.084

GRAVY (calculated)

0.059

Length

250 amino acids

Sequence
(BLAST)

001: LYFKQTISVI IDILLSSPCM FTAYLYHFQC QNGHVACFSC WSKLSNKCHI CSRDAKFARN IALEKIVESI KSSCSYAKWG CCKFINYAQR DAHEEACLFA
101: PSVCPISNCG YRGFTGRWSG HFLTSHSSDV MRFIYGQPFE VNIEVSVPFL VFLGEDDHLF LLQNNNLTPF GHAFSVVCLR SGNLNWMFSY QIEATSRKKP
201: ENRLQLKASV TNTRQWTGIY PSEAFLLVPF DFCHSSNIVL NISIERYAVV

Best Arabidopsis Sequence Match ( AT5G37930.1 )
(BLAST)

001: MARFSVCGGD DGEGPSNNNH QSRKRQRLPS IDENEEDAET SDAGSSGEED EDETQNQGMR PESEDRGSTS DDSDREVVIE ERRFGKFVNS QSSSSSKDSP
101: LSVTLLDPDV LDCPICCEPL KIPIFQCDNG HLACTLCCTK VRNRCPSCTL PIGYVRCRAM EKVIEASRVS CLNAKYGCKE STSYGNRFSH EQVCVFTPCS
201: CPILDCHYTG YYKDLNNHVR AEHKDDLISF VWNTRLTISL DLNKKTTILQ EENDGHVIVV QVFRALHAVY VSVSCIAPLT PGVGRLSCRL AKITVDSLLK
301: QGFMVKNIQK VTNEHPEDGF MLIPSYLFSG NDNLNLQIWI GHGRIFVHS

Arabidopsis Description

E3 ubiquitin-protein ligase SINA-like 10 [Source:UniProtKB/Swiss-Prot;Acc:Q84K34]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.