Factsheet for Os01t0124900-00

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG37942	Sorghum	cytosol, nucleus, plastid	50.0	37.22
KXG37941	Sorghum	cytosol	47.47	33.57
Os01t0125000-00	Rice	nucleus	45.96	26.84
Os01t0125500-00	Rice	mitochondrion	21.72	15.3
Os01t0761900-00	Rice	cytosol	12.12	14.72
Os06t0311300-01	Rice	plasma membrane	17.17	13.6
Os05t0152900-00	Rice	nucleus	24.75	12.25
Os02t0128800-01	Rice	cytosol	16.16	10.39
Os01t0123700-00	Rice	cytosol, mitochondrion, nucleus	15.66	10.26
Os07t0659800-01	Rice	cytosol	15.66	10.26
Os01t0123800-00	Rice	nucleus	19.7	10.1
Os03t0356414-01	Rice	cytosol	15.15	9.97
Os05t0152600-00	Rice	mitochondrion	24.24	9.34
Os01t0234900-01	Rice	cytoskeleton, nucleus, peroxisome	16.16	9.22
Os02t0293400-01	Rice	cytosol, nucleus, peroxisome	15.15	8.6
Os05t0238200-01	Rice	cytoskeleton, nucleus, peroxisome	15.66	8.59
Os05t0152700-00	Rice	cytosol, extracellular	2.53	5.05

Protein Annotations

Gene3D:3.30.40.10	MapMan:35.2	UniProt:A0A0P0UY51	ProteinID:BAS70164.1	GO:GO:0003674	GO:GO:0003824
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006464	GO:GO:0006511	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0008270
GO:GO:0009056	GO:GO:0009987	GO:GO:0016567	GO:GO:0016740	GO:GO:0019538	GO:GO:0046872
GO:GO:0061630	InterPro:IPR008974	InterPro:IPR013010	InterPro:IPR013083	EnsemblPlantsGene:Os01g0124900	EnsemblPlants:Os01t0124900-00
PFscan:PS51081	PANTHER:PTHR10315	PANTHER:PTHR10315:SF43	InterPro:SINA-like	SUPFAM:SSF49599	InterPro:TRAF-like
UniParc:UPI00039397FC	InterPro:Znf_RING/FYVE/PHD	InterPro:Znf_SIAH	SEG:seg	:	:

Description

Seven-in-absentia protein, sina domain containing protein. (Os01t0124900-00)

Coordinates

chr1:+:1369191..1374138

Molecular Weight (calculated)

22181.4 Da

IEP (calculated)

4.174

GRAVY (calculated)

-0.560

Length

198 amino acids

Sequence
(BLAST)

001: MHQQDITYFN KKSHEQACSY EPCFCPDSGC GFSGSVATLW KHFTTQHKWP STEFKYYTPF DLRVKPGAHF LRAGDGQLFV MNMVSVEPVG HGVSLVCIQP
101: NTSESSFRCN VVFSSFTGHH QISTLESVRC SSLSDGLPKN YFCIVPKSPG GGAAVLLRIT IDTKLVLEVE DEQEEEEDDD DYDEDEDEDD ESDDEDGN

Best Arabidopsis Sequence Match ( AT5G37870.1 )
(BLAST)

001: MVGVLLSERN GSQKRHCSSI SSDDGRKRVD KTRSAMLTDL DILDCPICYQ ALKIPVFQCG NGHLACSSCC PKLRNKCPAC ALPVGHIRCR AMERVLESVL
101: VPCRYADLGC TKTIYYGRES THEKICNFSP CSCPVQGCNY TGSYKDLYEH YDLTHSTGST AYSFNGVSYI AAMMFISDKI LIERVYEKKL LFVVQCFEEP
201: CGVYVSVSCI APSAPEVGEF SYGLLYTTWE GVTMTYQSPK VKKVLKVSSQ RPKDSFMLIP HSLLCGPLLG MMLCINELKQ M

Arabidopsis Description

Putative E3 ubiquitin-protein ligase SINA-like 6 [Source:UniProtKB/Swiss-Prot;Acc:Q9FKD9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.