Factsheet for Os01t0125500-00

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 3
mitochondrion 4
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os01t0761900-00	Rice	cytosol	24.91	42.94
TraesCS3D01G031300.1	Wheat	nucleus	32.38	33.21
TraesCS3B01G050100.1	Wheat	cytosol	32.38	33.21
TraesCS3A01G048300.1	Wheat	nucleus	32.38	33.21
HORVU3Hr1G004860.1	Barley	cytosol	29.54	32.94
TraesCS3B01G033800.1	Wheat	nucleus	32.03	32.85
TraesCS3B01G050900.1	Wheat	cytosol	32.38	31.16
TraesCS3B01G050200.1	Wheat	nucleus	26.33	29.96
TraesCS3B01G033700.1	Wheat	nucleus	30.96	29.79
TraesCS3D01G030300.1	Wheat	nucleus	30.96	29.1
TraesCS3B01G050700.1	Wheat	nucleus	31.32	28.66
KXG32009	Sorghum	nucleus	28.83	27.36
Os01t0125000-00	Rice	nucleus	27.05	22.42
Os01t0124900-00	Rice	cytosol	15.3	21.72
Os05t0152900-00	Rice	nucleus	28.83	20.25
Os06t0311300-01	Rice	plasma membrane	16.37	18.4
Os01t0123700-00	Rice	cytosol, mitochondrion, nucleus	18.15	16.89
Os05t0152600-00	Rice	mitochondrion	28.11	15.37
Os01t0123800-00	Rice	nucleus	19.22	13.99
Os03t0356414-01	Rice	cytosol	14.95	13.95
Os02t0128800-01	Rice	cytosol	14.95	13.64
Os07t0659800-01	Rice	cytosol	14.59	13.58
Os05t0238200-01	Rice	cytoskeleton, nucleus, peroxisome	15.66	12.19
Os01t0234900-01	Rice	cytoskeleton, nucleus, peroxisome	14.95	12.1
Os02t0293400-01	Rice	cytosol, nucleus, peroxisome	14.59	11.75
Os05t0152700-00	Rice	cytosol, extracellular	1.07	3.03

Protein Annotations

Gene3D:3.30.40.10	MapMan:35.2	InterPro:7-in-absentia-prot_TRAF-dom	UniProt:A0A0P0UXR5	ProteinID:BAS70167.1	GO:GO:0003674
GO:GO:0003824	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006464	GO:GO:0006511	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152
GO:GO:0008270	GO:GO:0009056	GO:GO:0009987	GO:GO:0016567	GO:GO:0016740	GO:GO:0019538
GO:GO:0046872	GO:GO:0061630	InterPro:IPR008974	InterPro:IPR013010	InterPro:IPR013083	EnsemblPlantsGene:Os01g0125500
EnsemblPlants:Os01t0125500-00	PFAM:PF03145	PFscan:PS51081	PANTHER:PTHR10315	PANTHER:PTHR10315:SF35	InterPro:SINA-like
SUPFAM:SSF49599	InterPro:TRAF-like	UniParc:UPI000393A705	InterPro:Znf_RING/FYVE/PHD	InterPro:Znf_SIAH	SEG:seg

Description

Seven-in-absentia protein, sina domain containing protein. (Os01t0125500-00)

Coordinates

chr1:-:1395980..1396825

Molecular Weight (calculated)

29546.3 Da

IEP (calculated)

9.024

GRAVY (calculated)

-0.004

Length

281 amino acids

Sequence
(BLAST)

001: GPIQFHLLRI LKDTGLFRFC SSSLSCRSSC HGKLLDTSRC HMCSRDGGYR RCVAVDHILY AITVPCPNAA HGCAARTPYH DSHGHAAGCP HAPCFCPEPG
101: CGFAAGATAA LLAHFTGTHG WPATVMWRRR AAVGVPLQEG KRVLSLLDDD GRGSHLFLLN VAQAGEAGLV GTVLAVEAAA HGHGDAPRFE CKVSFDRRGT
201: GWRQSSTFGV RSTNLSGGLP ADGFAFVAPN PPPAAASVTI TLFDISSGEP GSALRPVLPR SRRSRTRLSA TTTAAAAVIL R

Best Arabidopsis Sequence Match ( AT5G62800.2 )
(BLAST)

001: MEDSNSHPQN QTSKRKSSHP QKKQRMENET RSAKLLDLDV LDCPVCFEPL TIPTFQCDDG HIVCNFCFAK VSNKCPGPGC DLPIGNKRCF AMERVLESAF
101: VPCQNTEFGC TKSVSYEKVS SHEKECNYSQ CSCPNLECNY TGSYNIIYGH FMRRHLYNST IVSSKWGYST VDVLINIKEK VSVLWESRQK LLFVVQCFKE
201: RHGVYVTVRR IAPPASEFKK FSYRLSYSID GHNVTYESPE VKRLLEVNSQ IPDDSFMFVP NCLLHGFLIK PANEVQQVTI AQETVMEDPP TSLFKNSVPI
301: REDQIQNAIT NSIR

Arabidopsis Description

Protein with RING/U-box and TRAF-like domains [Source:TAIR;Acc:AT5G62800]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.