Factsheet for Os01t0123700-00

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, nucleus, cytosol

Predictor Summary:

nucleus 3
mitochondrion 3
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU7Hr1G021160.2	Barley	cytosol	48.34	51.23
TraesCS4A01G395500.1	Wheat	cytosol	46.36	50.18
Zm00001d040046_P001	Maize	cytosol, mitochondrion, nucleus	37.09	50.0
TraesCS4A01G395600.1	Wheat	cytosol	42.72	49.81
TraesCS5D01G504400.1	Wheat	cytosol	32.78	49.25
KXG32085	Sorghum	nucleus	27.15	36.28
Os06t0311300-01	Rice	plasma membrane	17.88	21.6
Os02t0128800-01	Rice	cytosol	21.85	21.43
Os03t0356414-01	Rice	cytosol	21.19	21.26
Os07t0659800-01	Rice	cytosol	20.53	20.53
Os05t0238200-01	Rice	cytoskeleton, nucleus, peroxisome	21.85	18.28
Os01t0125500-00	Rice	mitochondrion	16.89	18.15
Os02t0293400-01	Rice	cytosol, nucleus, peroxisome	20.86	18.05
Os01t0234900-01	Rice	cytoskeleton, nucleus, peroxisome	20.2	17.58
Os01t0125000-00	Rice	nucleus	18.54	16.52
Os05t0152900-00	Rice	nucleus	21.85	16.5
Os01t0124900-00	Rice	cytosol	10.26	15.66
Os01t0123800-00	Rice	nucleus	19.54	15.29
Os05t0152600-00	Rice	mitochondrion	22.19	13.04
Os01t0761900-00	Rice	cytosol	6.29	11.66
Os05t0152700-00	Rice	cytosol, extracellular	1.66	5.05

Protein Annotations

EntrezGene:107276545	Gene3D:3.30.40.10	MapMan:35.1	InterPro:7-in-absentia-prot_TRAF-dom	UniProt:A0A0P0UXX3	ProteinID:BAS70152.1
GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006464	GO:GO:0006511	GO:GO:0007275	GO:GO:0008150
GO:GO:0008152	GO:GO:0008270	GO:GO:0009056	GO:GO:0009987	GO:GO:0016567	GO:GO:0016740
GO:GO:0019538	GO:GO:0046872	GO:GO:0061630	InterPro:IPR001841	InterPro:IPR008974	InterPro:IPR013010
InterPro:IPR013083	EnsemblPlantsGene:Os01g0123700	EnsemblPlants:Os01t0123700-00	PFAM:PF03145	PFscan:PS50089	PFscan:PS51081
PANTHER:PTHR10315	PANTHER:PTHR10315:SF71	InterPro:SINA-like	SUPFAM:SSF49599	SUPFAM:SSF57850	InterPro:TRAF-like
UniParc:UPI000393B571	RefSeq:XP_015622136.1	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	InterPro:Znf_SIAH	:

Description

Zinc finger, RING-type domain containing protein. (Os01t0123700-00)

Coordinates

chr1:-:1333752..1334769

Molecular Weight (calculated)

33173.3 Da

IEP (calculated)

8.239

GRAVY (calculated)

-0.138

Length

302 amino acids

Sequence
(BLAST)

001: MQMQFPHLAT MMRLKKKGTM DNTGTPKRTR WSENKAQQDG KDETTKLTYS IERDALECPI CFVPFEDRVY MCKNGHAACG SCYAKMNTMC PCCIEPIGNI
101: RCRPLEKVLA AMSAPCRFST SAYMRLIRAS GCTEIVAYTE RRNHEASCPH APCVCPFDGC NYQGHLLYSH IQDEHATDAA VVATGCLRGT GTTVTLHKSK
201: PFHVLLHRGG SRVFLLLNGD NVLSGRSLSL VCISPPPPLP NCELLYKIEL GAVSRAPGEL GLSMSGTVPC VRRLEGFDAK AFLFVPDSYW GSSGTISVTV
301: HL

Best Arabidopsis Sequence Match ( AT5G37870.1 )
(BLAST)

001: MVGVLLSERN GSQKRHCSSI SSDDGRKRVD KTRSAMLTDL DILDCPICYQ ALKIPVFQCG NGHLACSSCC PKLRNKCPAC ALPVGHIRCR AMERVLESVL
101: VPCRYADLGC TKTIYYGRES THEKICNFSP CSCPVQGCNY TGSYKDLYEH YDLTHSTGST AYSFNGVSYI AAMMFISDKI LIERVYEKKL LFVVQCFEEP
201: CGVYVSVSCI APSAPEVGEF SYGLLYTTWE GVTMTYQSPK VKKVLKVSSQ RPKDSFMLIP HSLLCGPLLG MMLCINELKQ M

Arabidopsis Description

Putative E3 ubiquitin-protein ligase SINA-like 6 [Source:UniProtKB/Swiss-Prot;Acc:Q9FKD9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.