Factsheet for Os01t0125000-00

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU3Hr1G005320.1	Barley	nucleus	40.41	51.7
TraesCS3A01G062800.1	Wheat	nucleus	41.3	48.28
Os01t0124900-00	Rice	cytosol	26.84	45.96
TraesCS3B01G052700.1	Wheat	nucleus	29.79	39.92
EES00387	Sorghum	nucleus	33.33	35.42
TraesCS3B01G031100.1	Wheat	nucleus	35.69	29.88
Os01t0125500-00	Rice	mitochondrion	22.42	27.05
Os01t0761900-00	Rice	cytosol	12.98	26.99
Os05t0152900-00	Rice	nucleus	28.61	24.25
Os06t0311300-01	Rice	plasma membrane	16.52	22.4
Os07t0659800-01	Rice	cytosol	17.11	19.21
Os02t0128800-01	Rice	cytosol	17.4	19.16
Os03t0356414-01	Rice	cytosol	16.81	18.94
Os01t0123700-00	Rice	cytosol, mitochondrion, nucleus	16.52	18.54
Os01t0234900-01	Rice	cytoskeleton, nucleus, peroxisome	18.29	17.87
Os05t0152600-00	Rice	mitochondrion	26.84	17.7
Os02t0293400-01	Rice	cytosol, nucleus, peroxisome	17.99	17.48
Os05t0238200-01	Rice	cytoskeleton, nucleus, peroxisome	17.7	16.62
Os01t0123800-00	Rice	nucleus	17.99	15.8
Os05t0152700-00	Rice	cytosol, extracellular	2.06	7.07

Protein Annotations

Gene3D:3.30.40.10	MapMan:35.1	InterPro:7-in-absentia-prot_TRAF-dom	ProteinID:BAB21180.1	ProteinID:BAS70165.1	GO:GO:0003674
GO:GO:0003824	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006464	GO:GO:0006511	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152
GO:GO:0008270	GO:GO:0009056	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021	GO:GO:0016567
GO:GO:0016740	GO:GO:0019538	GO:GO:0046872	GO:GO:0061630	InterPro:IPR008974	InterPro:IPR013010
InterPro:IPR013083	EnsemblPlantsGene:Os01g0125000	EnsemblPlants:Os01t0125000-00	PFAM:PF03145	PFscan:PS51081	PANTHER:PTHR10315
PANTHER:PTHR10315:SF43	UniProt:Q9AWV2	InterPro:SINA-like	SUPFAM:SSF49599	InterPro:TRAF-like	UniParc:UPI000009F866
InterPro:Znf_RING/FYVE/PHD	InterPro:Znf_SIAH	SEG:seg	:	:	:

Description

Seven-in-absentia protein, sina domain containing protein. (Os01t0125000-00)

Coordinates

chr1:+:1375169..1376327

Molecular Weight (calculated)

36409.8 Da

IEP (calculated)

4.053

GRAVY (calculated)

-0.310

Length

339 amino acids

Sequence
(BLAST)

001: MEISSSLNKR KLGEAQHDGD RVVIKKRQSV SMDMEVLHCP VCFQILRPPV FQCDLGHLVC SPCRDNLPAG GKCPSPSCFG TPSVRCVAME RVVNSVEVAC
101: AYAEHGCPDK IAYANITEHE KTCPHAPCFC PEPGCGFAAA SAAALADHFT APRHNWPSHK LSYSQPFELR VHPGKNVLVG EEDGALFLLN VSPAAEHAVV
201: SLFSVQPHHG ASGFGRSASH FGCSVEFSCF LGHLQCSTLV TVTSSSLSDG MPEECFFSVP ELQDSVDGDA GVGVDIRITI DEAVPLFSCV DGMEDDDDED
301: CDDDVDANNG DDDENDGDTS DDEDEDDEDG DSCCDDEED

Best Arabidopsis Sequence Match ( AT5G37870.1 )
(BLAST)

001: MVGVLLSERN GSQKRHCSSI SSDDGRKRVD KTRSAMLTDL DILDCPICYQ ALKIPVFQCG NGHLACSSCC PKLRNKCPAC ALPVGHIRCR AMERVLESVL
101: VPCRYADLGC TKTIYYGRES THEKICNFSP CSCPVQGCNY TGSYKDLYEH YDLTHSTGST AYSFNGVSYI AAMMFISDKI LIERVYEKKL LFVVQCFEEP
201: CGVYVSVSCI APSAPEVGEF SYGLLYTTWE GVTMTYQSPK VKKVLKVSSQ RPKDSFMLIP HSLLCGPLLG MMLCINELKQ M

Arabidopsis Description

Putative E3 ubiquitin-protein ligase SINA-like 6 [Source:UniProtKB/Swiss-Prot;Acc:Q9FKD9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.