Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| HORVU1Hr1G049960.6 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G37890.1 | HORVU1Hr1G049960.6 | AT5G65940.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3A01G062800.1 | Wheat | nucleus | 87.92 | 80.34 |
| HORVU3Hr1G005260.1 | Barley | cytosol | 16.6 | 48.35 |
| Os01t0125000-00 | Rice | nucleus | 51.7 | 40.41 |
| HORVU0Hr1G006120.2 | Barley | cytosol, nucleus, plastid | 38.11 | 36.07 |
| HORVU3Hr1G004860.1 | Barley | cytosol | 32.83 | 34.52 |
| HORVU3Hr1G004890.1 | Barley | nucleus | 37.36 | 33.0 |
| HORVU1Hr1G012490.3 | Barley | nucleus | 40.75 | 32.53 |
| HORVU3Hr1G004950.1 | Barley | nucleus | 36.23 | 32.0 |
| HORVU4Hr1G056260.1 | Barley | nucleus | 32.83 | 31.64 |
| EES00387 | Sorghum | nucleus | 37.36 | 31.03 |
| HORVU0Hr1G006130.1 | Barley | nucleus | 38.11 | 30.61 |
| HORVU3Hr1G004880.2 | Barley | nucleus | 38.87 | 30.38 |
| CDY11709 | Canola | nucleus | 18.11 | 29.09 |
| CDY36209 | Canola | plastid | 21.13 | 26.54 |
| CDX99687 | Canola | nucleus | 25.66 | 24.03 |
| AT5G37870.1 | Thale cress | nucleus | 25.28 | 23.84 |
| CDY52473 | Canola | nucleus | 25.28 | 23.59 |
| Bra025434.1-P | Field mustard | nucleus | 25.28 | 23.59 |
| Bra004401.1-P | Field mustard | cytosol, mitochondrion, nucleus | 23.77 | 23.42 |
| CDY12498 | Canola | nucleus | 23.77 | 23.16 |
| Solyc03g036460.1.1 | Tomato | cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole | 19.25 | 23.08 |
| CDX95911 | Canola | cytosol, nucleus, plastid | 25.28 | 22.79 |
| CDY01699 | Canola | nucleus, plastid | 24.15 | 22.7 |
| CDY01756 | Canola | cytosol, nucleus, plastid | 25.28 | 22.56 |
| AT1G66630.1 | Thale cress | cytosol | 25.28 | 22.11 |
| CDY25763 | Canola | nucleus | 22.64 | 22.06 |
| PGSC0003DMT400043047 | Potato | cytosol | 15.09 | 21.74 |
| Bra012354.1-P | Field mustard | cytosol | 22.26 | 21.69 |
| HORVU2Hr1G118560.2 | Barley | nucleus | 22.64 | 21.43 |
| Bra022858.1-P | Field mustard | nucleus | 24.53 | 21.38 |
| AT5G37890.1 | Thale cress | nucleus | 23.02 | 21.33 |
| KRH42263 | Soybean | nucleus | 25.66 | 21.25 |
| AT5G37900.1 | Thale cress | nucleus | 19.25 | 21.16 |
| Bra004402.1-P | Field mustard | nucleus | 25.28 | 21.14 |
| Bra018266.1-P | Field mustard | plastid | 23.02 | 21.11 |
| CDY10787 | Canola | plastid | 23.02 | 21.11 |
| KRH58384 | Soybean | nucleus | 25.28 | 20.94 |
| AT1G66620.1 | Thale cress | nucleus | 24.53 | 20.77 |
| AT5G37910.1 | Thale cress | nucleus | 21.51 | 20.65 |
| Bra000425.1-P | Field mustard | nucleus | 21.51 | 20.14 |
| CDX96140 | Canola | cytosol, nucleus, plastid | 26.42 | 20.06 |
| HORVU7Hr1G021160.2 | Barley | cytosol | 21.51 | 20.0 |
| HORVU3Hr1G005270.1 | Barley | nucleus | 25.66 | 19.94 |
| Bra004174.1-P | Field mustard | nucleus | 26.42 | 19.83 |
| AT1G66650.1 | Thale cress | nucleus | 24.53 | 19.76 |
| VIT_14s0006g01870.t01 | Wine grape | cytosol | 14.72 | 19.5 |
| AT5G62800.1 | Thale cress | nucleus | 25.28 | 19.25 |
| HORVU7Hr1G082100.1 | Barley | nucleus | 20.38 | 18.82 |
| Bra004176.1-P | Field mustard | nucleus | 23.77 | 18.69 |
| HORVU6Hr1G016120.2 | Barley | nucleus | 21.89 | 18.65 |
| Solyc03g034460.2.1 | Tomato | nucleus | 25.28 | 18.61 |
| CDY47873 | Canola | nucleus | 22.64 | 18.52 |
| CDY01695 | Canola | nucleus | 21.51 | 18.45 |
| CDX96138 | Canola | nucleus | 23.4 | 18.24 |
| Bra028395.1-P | Field mustard | nucleus | 22.26 | 18.21 |
| CDY27008 | Canola | nucleus | 22.26 | 17.93 |
| Solyc03g042550.1.1 | Tomato | nucleus | 24.15 | 17.78 |
| HORVU4Hr1G087120.3 | Barley | nucleus | 23.77 | 17.6 |
| AT1G66660.2 | Thale cress | nucleus | 23.02 | 17.53 |
| AT1G66610.1 | Thale cress | nucleus | 24.15 | 17.49 |
| AT5G37930.1 | Thale cress | nucleus | 23.02 | 17.48 |
| HORVU3Hr1G018420.2 | Barley | plastid | 20.75 | 17.35 |
| HORVU3Hr1G018640.1 | Barley | cytosol | 13.58 | 17.31 |
| CDY70665 | Canola | nucleus | 21.13 | 17.28 |
| CDY36211 | Canola | nucleus | 23.4 | 17.17 |
| HORVU3Hr1G032110.2 | Barley | cytoskeleton, nucleus, plasma membrane | 21.13 | 17.13 |
| PGSC0003DMT400043050 | Potato | nucleus | 24.53 | 17.06 |
| Solyc03g042520.1.1 | Tomato | nucleus | 19.62 | 16.77 |
| CDX83363 | Canola | cytosol, nucleus, plasma membrane | 11.32 | 16.76 |
| Bra019710.1-P | Field mustard | nucleus | 21.51 | 16.67 |
| HORVU2Hr1G118840.1 | Barley | plastid | 23.02 | 16.44 |
| Solyc03g034450.2.1 | Tomato | nucleus | 23.77 | 16.07 |
| HORVU2Hr1G022590.1 | Barley | nucleus | 20.0 | 13.98 |
| HORVU1Hr1G033130.2 | Barley | plastid | 21.13 | 13.9 |
| CDY01757 | Canola | cytosol | 2.26 | 11.32 |
| CDY01758 | Canola | cytosol | 16.6 | 10.07 |
Protein Annotations
| MapMan:19.2.2.1.5.3.5 | Gene3D:3.30.40.10 | InterPro:7-in-absentia-prot_TRAF-dom | UniProt:A0A287JZS6 | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006464 |
| GO:GO:0006511 | GO:GO:0007275 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008270 | GO:GO:0009056 |
| GO:GO:0009987 | GO:GO:0016567 | GO:GO:0019538 | GO:GO:0046872 | EnsemblPlantsGene:HORVU3Hr1G005320 | EnsemblPlants:HORVU3Hr1G005320.1 |
| InterPro:IPR008974 | InterPro:IPR013010 | InterPro:IPR013083 | PFAM:PF03145 | PFscan:PS51081 | PANTHER:PTHR10315 |
| PANTHER:PTHR10315:SF43 | InterPro:SINA-like | SUPFAM:SSF49599 | InterPro:TRAF-like | UniParc:UPI000B474BEB | InterPro:Znf_RING/FYVE/PHD |
| InterPro:Znf_SIAH | SEG:seg | : | : | : | : |
Description
E3 ubiquitin-protein ligase [Source:UniProtKB/TrEMBL;Acc:A0A287JZS6]
Coordinates
chrchr3H:+:13101408..13103460
Molecular Weight (calculated)
29064.1 Da
IEP (calculated)
6.415
GRAVY (calculated)
0.046
Length
265 amino acids
Sequence
(BLAST)
(BLAST)
001: MEAKSSSINK ETEAIKEEER VVKKQNVTMA MEVFDCPVCS APLRPPVFQC TLGHFVCSPC CDKLPDGKCQ ACSGAVLKSS CYGMERIVES ILVPCPYAEH
101: GCTDMITYYL KGEHKEVCPH EPCYCPEPGC GFAGTTATLL DHFTSQHKWL MTVFKYYVPF HLTAKPGMHV LRAQDGNLFL LNVSSPELTL HGISLVHVQP
201: KILELSRFGC SVGFSCWMGH YQLSSLDSVT SSSLSDGLPK SSFFSFVPKS SAVLTITIDI DGADV
101: GCTDMITYYL KGEHKEVCPH EPCYCPEPGC GFAGTTATLL DHFTSQHKWL MTVFKYYVPF HLTAKPGMHV LRAQDGNLFL LNVSSPELTL HGISLVHVQP
201: KILELSRFGC SVGFSCWMGH YQLSSLDSVT SSSLSDGLPK SSFFSFVPKS SAVLTITIDI DGADV
001: MVGVLLSERN GSQKRHCSSI SSDDGRKRVD KTRSAMLTDL DILDCPICYQ ALKIPVFQCG NGHLACSSCC PKLRNKCPAC ALPVGHIRCR AMERVLESVL
101: VPCRYADLGC TKTIYYGRES THEKICNFSP CSCPVQGCNY TGSYKDLYEH YDLTHSTGST AYSFNGVSYI AAMMFISDKI LIERVYEKKL LFVVQCFEEP
201: CGVYVSVSCI APSAPEVGEF SYGLLYTTWE GVTMTYQSPK VKKVLKVSSQ RPKDSFMLIP HSLLCGPLLG MMLCINELKQ M
101: VPCRYADLGC TKTIYYGRES THEKICNFSP CSCPVQGCNY TGSYKDLYEH YDLTHSTGST AYSFNGVSYI AAMMFISDKI LIERVYEKKL LFVVQCFEEP
201: CGVYVSVSCI APSAPEVGEF SYGLLYTTWE GVTMTYQSPK VKKVLKVSSQ RPKDSFMLIP HSLLCGPLLG MMLCINELKQ M
Arabidopsis Description
Putative E3 ubiquitin-protein ligase SINA-like 6 [Source:UniProtKB/Swiss-Prot;Acc:Q9FKD9]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.