Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra019710.1-P | Field mustard | nucleus | 98.15 | 92.98 |
| AT1G66650.1 | Thale cress | nucleus | 58.95 | 58.05 |
| CDY12498 | Canola | nucleus | 34.88 | 41.54 |
| CDY25763 | Canola | nucleus | 34.88 | 41.54 |
| CDY47873 | Canola | nucleus | 38.89 | 38.89 |
| CDY11709 | Canola | nucleus | 19.75 | 38.79 |
| CDX96138 | Canola | nucleus | 40.43 | 38.53 |
| HORVU3Hr1G005260.1 | Barley | cytosol | 10.8 | 38.46 |
| CDY27008 | Canola | nucleus | 38.27 | 37.69 |
| CDY52473 | Canola | nucleus | 31.79 | 36.27 |
| CDX99687 | Canola | nucleus | 31.48 | 36.04 |
| CDY36211 | Canola | nucleus | 38.89 | 34.9 |
| CDY01699 | Canola | nucleus, plastid | 30.25 | 34.75 |
| CDY10787 | Canola | plastid | 30.56 | 34.26 |
| CDX95911 | Canola | cytosol, nucleus, plastid | 30.56 | 33.67 |
| CDY01756 | Canola | cytosol, nucleus, plastid | 28.7 | 31.31 |
| CDX96140 | Canola | cytosol, nucleus, plastid | 33.64 | 31.23 |
| CDY36209 | Canola | plastid | 19.44 | 29.86 |
| KRH58384 | Soybean | nucleus | 29.32 | 29.69 |
| KRH42263 | Soybean | nucleus | 29.01 | 29.38 |
| CDY01695 | Canola | nucleus | 27.78 | 29.13 |
| CDX83363 | Canola | cytosol, nucleus, plasma membrane | 15.74 | 28.49 |
| TraesCS3D01G028800.1 | Wheat | nucleus | 18.52 | 28.04 |
| VIT_14s0006g01870.t01 | Wine grape | cytosol | 16.98 | 27.5 |
| HORVU3Hr1G004860.1 | Barley | cytosol | 20.68 | 26.59 |
| CDY01757 | Canola | cytosol | 4.32 | 26.42 |
| Solyc03g036460.1.1 | Tomato | cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole | 17.28 | 25.34 |
| TraesCS3A01G048300.1 | Wheat | nucleus | 21.3 | 25.18 |
| TraesCS3D01G031300.1 | Wheat | nucleus | 21.3 | 25.18 |
| TraesCS3B01G033800.1 | Wheat | nucleus | 20.99 | 24.82 |
| TraesCS3B01G050100.1 | Wheat | cytosol | 20.37 | 24.09 |
| TraesCS3D01G504900.1 | Wheat | nucleus | 20.37 | 24.09 |
| KXG32008 | Sorghum | cytosol, nucleus, plastid | 19.75 | 24.06 |
| TraesCS3A01G030800.1 | Wheat | cytosol | 20.06 | 23.64 |
| TraesCS3B01G053000.1 | Wheat | cytosol | 20.06 | 23.13 |
| TraesCS3A01G030600.1 | Wheat | nucleus | 20.06 | 23.05 |
| TraesCS3B01G053500.1 | Wheat | cytosol | 20.06 | 23.05 |
| TraesCS3A01G031100.1 | Wheat | cytosol | 19.14 | 23.05 |
| KXG32009 | Sorghum | nucleus | 20.99 | 22.97 |
| TraesCS3A01G062700.1 | Wheat | nucleus | 19.44 | 22.91 |
| TraesCS3B01G560800.1 | Wheat | nucleus | 19.44 | 22.66 |
| TraesCS3B01G074800.1 | Wheat | cytosol | 19.14 | 22.38 |
| HORVU4Hr1G056260.1 | Barley | nucleus | 18.83 | 22.18 |
| HORVU3Hr1G004890.1 | Barley | nucleus | 20.37 | 22.0 |
| TraesCS3B01G052800.1 | Wheat | cytosol | 19.14 | 21.99 |
| TraesCS3D01G029000.1 | Wheat | cytosol | 19.14 | 21.99 |
| Solyc03g034460.2.1 | Tomato | nucleus | 24.38 | 21.94 |
| Solyc03g042550.1.1 | Tomato | nucleus | 24.38 | 21.94 |
| TraesCS5A01G228300.1 | Wheat | cytosol | 21.3 | 21.9 |
| TraesCS3A01G030100.1 | Wheat | nucleus | 20.06 | 21.89 |
| KXG32014 | Sorghum | nucleus | 14.81 | 21.82 |
| TraesCS2A01G446400.1 | Wheat | cytosol, nucleus, plastid | 17.9 | 21.56 |
| TraesCS3B01G054400.1 | Wheat | cytosol | 19.75 | 21.55 |
| TraesCS3D01G030300.1 | Wheat | nucleus | 19.75 | 21.4 |
| TraesCS3A01G031200.1 | Wheat | cytosol | 17.59 | 21.27 |
| TraesCS3B01G028900.1 | Wheat | cytosol | 19.75 | 21.26 |
| TraesCS3B01G033700.1 | Wheat | nucleus | 19.14 | 21.23 |
| TraesCS3D01G015600.1 | Wheat | cytosol | 19.44 | 21.21 |
| TraesCS3B01G053400.1 | Wheat | cytosol, nucleus, plastid | 19.14 | 21.16 |
| HORVU3Hr1G005320.1 | Barley | nucleus | 17.28 | 21.13 |
| TraesCSU01G045900.1 | Wheat | cytosol | 19.44 | 21.07 |
| PGSC0003DMT400043050 | Potato | nucleus | 24.69 | 21.0 |
| Solyc03g034450.2.1 | Tomato | nucleus | 25.31 | 20.92 |
| TraesCS3D01G029600.1 | Wheat | nucleus | 21.6 | 20.9 |
| TraesCS3B01G031200.1 | Wheat | nucleus | 18.83 | 20.89 |
| TraesCS3B01G050900.1 | Wheat | cytosol | 18.83 | 20.89 |
| TraesCS3B01G050700.1 | Wheat | nucleus | 19.75 | 20.85 |
| TraesCS3B01G032100.1 | Wheat | cytosol | 18.21 | 20.77 |
| KXG37942 | Sorghum | cytosol, nucleus, plastid | 16.98 | 20.68 |
| PGSC0003DMT400043047 | Potato | cytosol | 11.73 | 20.65 |
| TraesCS3A01G031300.1 | Wheat | cytosol | 17.9 | 20.64 |
| TraesCS1A01G060800.1 | Wheat | nucleus | 19.44 | 20.52 |
| TraesCS3A01G062800.1 | Wheat | nucleus | 18.21 | 20.34 |
| Solyc03g042520.1.1 | Tomato | nucleus | 19.44 | 20.32 |
| OQU77422 | Sorghum | cytosol | 17.9 | 20.28 |
| TraesCS5A01G531400.2 | Wheat | nucleus | 20.68 | 20.24 |
| TraesCS4D01G356400.2 | Wheat | nucleus | 20.99 | 20.24 |
| TraesCS3B01G052700.1 | Wheat | nucleus | 15.74 | 20.16 |
| HORVU3Hr1G004880.2 | Barley | nucleus | 20.99 | 20.06 |
| Zm00001d041049_P001 | Maize | nucleus | 20.06 | 19.88 |
| HORVU3Hr1G004950.1 | Barley | nucleus | 18.21 | 19.67 |
| TraesCS3B01G050200.1 | Wheat | nucleus | 14.81 | 19.43 |
| OQU78944 | Sorghum | nucleus | 19.44 | 19.33 |
| TraesCS4B01G363200.1 | Wheat | nucleus | 19.44 | 19.21 |
| OQU86453 | Sorghum | cytosol | 12.65 | 19.16 |
| EES00387 | Sorghum | nucleus | 18.83 | 19.12 |
| HORVU4Hr1G087120.3 | Barley | nucleus | 20.99 | 18.99 |
| EES17728 | Sorghum | cytosol, mitochondrion, nucleus | 19.14 | 18.96 |
| KXG37941 | Sorghum | cytosol | 16.05 | 18.57 |
| CDY67278 | Canola | cytosol | 4.63 | 18.52 |
| HORVU1Hr1G012490.3 | Barley | nucleus | 18.52 | 18.07 |
| CDX97399 | Canola | nucleus | 17.9 | 18.07 |
| HORVU0Hr1G006120.2 | Barley | cytosol, nucleus, plastid | 15.43 | 17.86 |
| HORVU2Hr1G118560.2 | Barley | nucleus | 15.43 | 17.86 |
| CDY14268 | Canola | nucleus | 17.59 | 17.81 |
| TraesCS1D01G061700.1 | Wheat | nucleus | 19.14 | 17.61 |
| TraesCS2B01G594500.1 | Wheat | nucleus, plastid | 20.37 | 17.6 |
| TraesCS2D01G564800.1 | Wheat | nucleus, plastid | 20.37 | 17.6 |
| CDY14808 | Canola | cytosol | 16.36 | 17.55 |
| TraesCS2A01G589200.1 | Wheat | nucleus, plastid | 20.06 | 17.43 |
| CDX89221 | Canola | nucleus | 17.28 | 17.39 |
| CDX92848 | Canola | nucleus | 16.36 | 17.38 |
| CDY35390 | Canola | nucleus | 16.36 | 17.26 |
| HORVU2Hr1G118840.1 | Barley | plastid | 19.75 | 17.25 |
| OQU77414 | Sorghum | mitochondrion, nucleus | 18.83 | 17.23 |
| CDY06889 | Canola | cytosol | 15.74 | 17.17 |
| CDY22549 | Canola | nucleus | 16.36 | 17.15 |
| CDY19018 | Canola | nucleus | 16.98 | 17.08 |
| EES17731 | Sorghum | nucleus | 18.21 | 17.05 |
| TraesCS3A01G032200.1 | Wheat | nucleus | 17.59 | 16.76 |
| TraesCS3B01G052400.1 | Wheat | nucleus | 17.59 | 16.76 |
| TraesCS3D01G029300.1 | Wheat | nucleus | 17.59 | 16.76 |
| TraesCSU01G231400.1 | Wheat | nucleus | 17.9 | 16.76 |
| CDY57244 | Canola | cytosol | 15.74 | 16.56 |
| TraesCS3B01G032300.1 | Wheat | cytosol | 10.19 | 16.5 |
| CDX71977 | Canola | cytosol | 15.74 | 16.45 |
| HORVU3Hr1G005270.1 | Barley | nucleus | 17.28 | 16.42 |
| CDX88968 | Canola | cytosol | 15.74 | 16.4 |
| CDY67927 | Canola | cytosol | 15.74 | 16.4 |
| CDX89132 | Canola | cytosol | 16.36 | 16.26 |
| CDY43950 | Canola | nucleus | 16.05 | 16.0 |
| CDY56244 | Canola | cytosol | 14.2 | 15.92 |
| CDX67865 | Canola | nucleus | 15.74 | 15.79 |
| CDY25077 | Canola | nucleus | 15.74 | 15.79 |
| KXG21322 | Sorghum | nucleus | 18.21 | 15.78 |
| TraesCSU01G021700.1 | Wheat | nucleus | 17.59 | 15.62 |
| HORVU0Hr1G006130.1 | Barley | nucleus | 15.74 | 15.45 |
| EES17735 | Sorghum | mitochondrion | 21.3 | 15.37 |
| TraesCS2A01G586400.1 | Wheat | nucleus | 17.28 | 15.34 |
| TraesCS2D01G600200.1 | Wheat | nucleus | 17.28 | 15.34 |
| OQU77425 | Sorghum | nucleus | 17.59 | 15.16 |
| TraesCS1D01G102900.1 | Wheat | nucleus | 17.59 | 14.92 |
| TraesCS3B01G031100.1 | Wheat | nucleus | 18.21 | 14.57 |
| CDY06056 | Canola | cytosol | 11.73 | 14.5 |
| TraesCS1A01G070000.1 | Wheat | plastid | 10.49 | 13.99 |
| EES02574 | Sorghum | nucleus | 18.83 | 13.62 |
| TraesCS3A01G032100.1 | Wheat | nucleus | 19.14 | 13.6 |
| TraesCS3D01G029700.1 | Wheat | cytosol, mitochondrion, nucleus | 11.73 | 13.33 |
| TraesCS3D01G029400.1 | Wheat | nucleus | 18.83 | 13.29 |
| CDY01758 | Canola | cytosol | 17.59 | 13.04 |
| TraesCS3B01G052300.1 | Wheat | nucleus | 18.52 | 12.93 |
| CDY67900 | Canola | cytosol, endoplasmic reticulum, plastid | 9.57 | 11.23 |
| CDY14650 | Canola | cytosol, nucleus, plastid | 7.41 | 10.86 |
| CDX75727 | Canola | cytosol | 7.1 | 10.75 |
| CDX82523 | Canola | cytosol | 6.79 | 10.28 |
| CDY64066 | Canola | cytosol | 3.4 | 10.19 |
| CDY38819 | Canola | nucleus | 5.86 | 9.79 |
| CDY67899 | Canola | cytosol, plastid | 4.32 | 8.43 |
| Os05t0152700-00 | Rice | cytosol, extracellular | 0.93 | 3.03 |
Protein Annotations
| KEGG:00220+6.3.2.- | KEGG:00261+6.3.2.- | KEGG:00380+6.3.2.- | MapMan:19.2.2.1.5.3.5 | Gene3D:3.30.40.10 | InterPro:7-in-absentia-prot_TRAF-dom |
| GO:A0A078JW34 | UniProt:A0A078JW34 | EnsemblPlants:CDY70665 | ProteinID:CDY70665 | ProteinID:CDY70665.1 | GO:GO:0003674 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0006464 | GO:GO:0006511 | GO:GO:0007275 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008270 |
| GO:GO:0009056 | GO:GO:0009987 | GO:GO:0016567 | GO:GO:0019538 | GO:GO:0046872 | EnsemblPlantsGene:GSBRNA2T00005128001 |
| InterPro:IPR008974 | InterPro:IPR013010 | InterPro:IPR013083 | PFAM:PF03145 | PFscan:PS51081 | PANTHER:PTHR10315 |
| PANTHER:PTHR10315:SF43 | InterPro:SINA-like | SUPFAM:SSF49599 | InterPro:TRAF-like | UniPathway:UPA00143 | UniParc:UPI0004EE0C1C |
| InterPro:Znf_RING/FYVE/PHD | InterPro:Znf_SIAH | SEG:seg | : | : | : |
Description
BnaA02g35510DE3 ubiquitin-protein ligase [Source:UniProtKB/TrEMBL;Acc:A0A078JW34]
Coordinates
chrLK042858:+:1291..2372
Molecular Weight (calculated)
36387.7 Da
IEP (calculated)
8.353
GRAVY (calculated)
-0.481
Length
324 amino acids
Sequence
(BLAST)
(BLAST)
001: MSTSPRRDDG RRASDRGSSK KQRLPHVSGN ESSDDSSSAE EDDSCERVLL VLSDDSDSDE EIRLTDILRS RRPQRLSPPK SMTLPNSDVL DCPCCFEPLK
101: RPVFQCNNGH LACYSCCTKL KKKCSLCAMP IGDTRCRPIE KVIKTCLVAC SNAKYGCKQS TRYDKVANHE KLYVFAPCSC PVRNCNYVGS YKDLNNHFRA
201: THKRIPGEIV SFVFNSPKLF GLDHNDDQVI FQEEKEGDLV VVKGFKRSDG VCVTVRRIAP IVKEIPKLSC SIARLKAHST LRLGFQVDNV QKVGEQQVQP
301: ENNFMLIPSH MSGCCHCMKM QICI
101: RPVFQCNNGH LACYSCCTKL KKKCSLCAMP IGDTRCRPIE KVIKTCLVAC SNAKYGCKQS TRYDKVANHE KLYVFAPCSC PVRNCNYVGS YKDLNNHFRA
201: THKRIPGEIV SFVFNSPKLF GLDHNDDQVI FQEEKEGDLV VVKGFKRSDG VCVTVRRIAP IVKEIPKLSC SIARLKAHST LRLGFQVDNV QKVGEQQVQP
301: ENNFMLIPSH MSGCCHCMKM QICI
001: MTKLGRRNDG GGKSHRSSTK RQRRTSVSVD DPSPGEEEEK TLVVLTDDSD SEEDDKPLGD VLRTCRKRRV SSPKSVTLPN SNVLECPNCF DPLKKPIFQC
101: NNGHLACFLC CIKLKKRCSF CKLPIGDVRC RAMEKVIKAG LVSCSNAIYG CKQSTTYGNQ LQSHEKVCVF APCSCPIKDC NYIGFYKDLI NHFRATHKVS
201: PGDINSFVFD RPVIFGLDLD SSDKMVIFVE EKQGNLFVVQ GFIGSHGVYA TVSHIAPMVP EVRKFSCSLA RLRPYSTLRL GLEVKNIQKL RSQEEQPQED
301: FLLIPSYMVN GDHMKMEISI GDKNDYTHI
101: NNGHLACFLC CIKLKKRCSF CKLPIGDVRC RAMEKVIKAG LVSCSNAIYG CKQSTTYGNQ LQSHEKVCVF APCSCPIKDC NYIGFYKDLI NHFRATHKVS
201: PGDINSFVFD RPVIFGLDLD SSDKMVIFVE EKQGNLFVVQ GFIGSHGVYA TVSHIAPMVP EVRKFSCSLA RLRPYSTLRL GLEVKNIQKL RSQEEQPQED
301: FLLIPSYMVN GDHMKMEISI GDKNDYTHI
Arabidopsis Description
E3 ubiquitin-protein ligase SINA-like 4 [Source:UniProtKB/Swiss-Prot;Acc:Q9C9M0]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.