Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- mitochondrion 2
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| TraesCS1A01G190800.1 | |
| TraesCS1B01G206000.1 | |
| TraesCS1D01G194800.2 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G37890.1 | TraesCS1A01G190800.1 | AT5G65940.1 | 21798944 |
| AT5G37890.1 | TraesCS1B01G206000.1 | AT5G65940.1 | 21798944 |
| AT5G37890.1 | TraesCS1D01G194800.2 | AT5G65940.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| HORVU3Hr1G004890.1 | Barley | nucleus | 56.14 | 53.33 |
| TraesCS1D01G061700.1 | Wheat | nucleus | 54.04 | 43.75 |
| TraesCS3D01G029400.1 | Wheat | nucleus | 61.4 | 38.13 |
| TraesCS3D01G029000.1 | Wheat | cytosol | 36.49 | 36.88 |
| TraesCS3D01G029600.1 | Wheat | nucleus | 42.46 | 36.12 |
| TraesCS3D01G029300.1 | Wheat | nucleus | 41.05 | 34.41 |
| TraesCS3D01G028800.1 | Wheat | nucleus | 24.91 | 33.18 |
| TraesCS3D01G504900.1 | Wheat | nucleus | 23.51 | 24.45 |
| PGSC0003DMT400043047 | Potato | cytosol | 15.44 | 23.91 |
| TraesCS3D01G031300.1 | Wheat | nucleus | 22.81 | 23.72 |
| TraesCS3D01G030300.1 | Wheat | nucleus | 24.21 | 23.08 |
| CDX83363 | Canola | cytosol, nucleus, plasma membrane | 14.04 | 22.35 |
| Solyc03g036460.1.1 | Tomato | cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole | 15.44 | 19.91 |
| TraesCS5D01G504400.1 | Wheat | cytosol | 13.33 | 18.91 |
| TraesCS3D01G015600.1 | Wheat | cytosol | 18.6 | 17.85 |
| CDY11709 | Canola | nucleus | 10.18 | 17.58 |
| TraesCS1D01G134000.1 | Wheat | mitochondrion, nucleus, peroxisome, plasma membrane | 14.04 | 15.87 |
| AT5G37900.1 | Thale cress | nucleus | 13.33 | 15.77 |
| CDY12498 | Canola | nucleus | 14.74 | 15.44 |
| CDY25763 | Canola | nucleus | 14.39 | 15.07 |
| Bra012354.1-P | Field mustard | cytosol | 14.39 | 15.07 |
| Bra004401.1-P | Field mustard | cytosol, mitochondrion, nucleus | 14.04 | 14.87 |
| Bra025434.1-P | Field mustard | nucleus | 14.74 | 14.79 |
| CDY52473 | Canola | nucleus | 14.74 | 14.79 |
| Bra018266.1-P | Field mustard | plastid | 14.74 | 14.53 |
| CDY10787 | Canola | plastid | 14.74 | 14.53 |
| Bra000425.1-P | Field mustard | nucleus | 14.39 | 14.49 |
| KRH42263 | Soybean | nucleus | 16.14 | 14.38 |
| CDX96140 | Canola | cytosol, nucleus, plastid | 17.54 | 14.33 |
| CDY01699 | Canola | nucleus, plastid | 14.04 | 14.18 |
| Bra004174.1-P | Field mustard | nucleus | 17.54 | 14.16 |
| CDX99687 | Canola | nucleus | 14.04 | 14.13 |
| KRH58384 | Soybean | nucleus | 15.79 | 14.06 |
| AT5G37870.1 | Thale cress | nucleus | 13.68 | 13.88 |
| TraesCS1D01G102900.1 | Wheat | nucleus | 18.6 | 13.87 |
| TraesCS3D01G018100.1 | Wheat | cytosol | 12.98 | 13.81 |
| TraesCS3D01G020800.1 | Wheat | cytosol, nucleus, plastid | 13.33 | 13.77 |
| TraesCS2D01G131700.1 | Wheat | cytosol | 14.04 | 13.29 |
| AT5G62800.1 | Thale cress | nucleus | 16.14 | 13.22 |
| CDY27008 | Canola | nucleus | 15.09 | 13.07 |
| Bra028395.1-P | Field mustard | nucleus | 14.74 | 12.96 |
| CDY47873 | Canola | nucleus | 14.74 | 12.96 |
| TraesCS4D01G164700.1 | Wheat | nucleus | 13.68 | 12.96 |
| AT1G66630.1 | Thale cress | cytosol | 13.68 | 12.87 |
| AT1G66620.1 | Thale cress | nucleus | 14.04 | 12.78 |
| TraesCS3D01G018300.1 | Wheat | mitochondrion | 14.39 | 12.69 |
| AT5G37910.1 | Thale cress | nucleus | 12.28 | 12.68 |
| CDY01695 | Canola | nucleus | 13.68 | 12.62 |
| AT5G37890.1 | Thale cress | nucleus | 12.63 | 12.59 |
| CDX95911 | Canola | cytosol, nucleus, plastid | 12.98 | 12.59 |
| Solyc03g034460.2.1 | Tomato | nucleus | 15.79 | 12.5 |
| TraesCS4D01G356400.2 | Wheat | nucleus | 14.74 | 12.5 |
| CDY01756 | Canola | cytosol, nucleus, plastid | 12.98 | 12.46 |
| CDY36209 | Canola | plastid | 9.12 | 12.32 |
| Bra004402.1-P | Field mustard | nucleus | 13.68 | 12.3 |
| Solyc03g042550.1.1 | Tomato | nucleus | 15.44 | 12.22 |
| Bra022858.1-P | Field mustard | nucleus | 12.98 | 12.17 |
| AT1G66650.1 | Thale cress | nucleus | 14.04 | 12.16 |
| CDY70665 | Canola | nucleus | 13.33 | 11.73 |
| TraesCS3D01G165600.1 | Wheat | cytoskeleton, nucleus, plasma membrane | 13.33 | 11.69 |
| PGSC0003DMT400043050 | Potato | nucleus | 15.44 | 11.55 |
| AT1G66610.1 | Thale cress | nucleus | 14.74 | 11.48 |
| AT5G37930.1 | Thale cress | nucleus | 14.04 | 11.46 |
| TraesCS7D01G340900.1 | Wheat | cytosol, nucleus, peroxisome | 13.68 | 11.44 |
| Bra019710.1-P | Field mustard | nucleus | 13.68 | 11.4 |
| Solyc03g034450.2.1 | Tomato | nucleus | 15.09 | 10.97 |
| TraesCS2D01G564800.1 | Wheat | nucleus, plastid | 14.39 | 10.93 |
| AT1G66660.2 | Thale cress | nucleus | 12.98 | 10.63 |
| Bra004176.1-P | Field mustard | nucleus | 11.93 | 10.09 |
| CDX96138 | Canola | nucleus | 11.93 | 10.0 |
| CDY36211 | Canola | nucleus | 11.58 | 9.14 |
| TraesCS2D01G600200.1 | Wheat | nucleus | 11.58 | 9.04 |
| VIT_14s0006g01870.t01 | Wine grape | cytosol | 6.32 | 9.0 |
| Solyc03g042520.1.1 | Tomato | nucleus | 9.12 | 8.39 |
| CDY01757 | Canola | cytosol | 1.4 | 7.55 |
| CDY01758 | Canola | cytosol | 5.61 | 3.66 |
Protein Annotations
| Gene3D:3.30.40.10 | MapMan:35.2 | InterPro:7-in-absentia-prot_TRAF-dom | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006511 | GO:GO:0007275 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008270 | GO:GO:0009056 | GO:GO:0009987 | GO:GO:0019538 |
| InterPro:IPR008974 | InterPro:IPR013010 | InterPro:IPR013083 | PFAM:PF03145 | PFscan:PS51081 | PANTHER:PTHR10315 |
| PANTHER:PTHR10315:SF43 | InterPro:SINA-like | SUPFAM:SSF49599 | InterPro:TRAF-like | EnsemblPlantsGene:TraesCS3D01G029700 | EnsemblPlants:TraesCS3D01G029700.1 |
| InterPro:Znf_RING/FYVE/PHD | InterPro:Znf_SIAH | SEG:seg | : | : | : |
Description
No Description!
Coordinates
chr3D:+:10724108..10724965
Molecular Weight (calculated)
29729.7 Da
IEP (calculated)
8.857
GRAVY (calculated)
-0.136
Length
285 amino acids
Sequence
(BLAST)
(BLAST)
001: MEHVVQEAKV ACSNDKYGCA EKVTYYKKEE HKKACPYVPC FCPQSGCGFA GSTKVLLDHF TTQHKCPSTT LPDSGTVYLR LQPGLHVLRC TGYFFLLSMA
101: SEPFGHAISV LCVQPIVMEP KFKCNMEYDC LTTGSCESTN CLIRSSSLSD GLPAVYDLII PKGKISDDGN GIMLRATILS RSCLQGKGLT ADLQGMPYTK
201: NAIAAAVAPA TAASVAPATA AAAATAPAAS VAPATAAPVA PANAAPAADT SRREGERGRG RRGGRGGRGG AVGRGQGPWR GRGRG
101: SEPFGHAISV LCVQPIVMEP KFKCNMEYDC LTTGSCESTN CLIRSSSLSD GLPAVYDLII PKGKISDDGN GIMLRATILS RSCLQGKGLT ADLQGMPYTK
201: NAIAAAVAPA TAASVAPATA AAAATAPAAS VAPATAAPVA PANAAPAADT SRREGERGRG RRGGRGGRGG AVGRGQGPWR GRGRG
001: MVGVLLSERN GSQKRHCSSI SSDDGRKRVD KTRSAMLTDL DILDCPICYQ ALKIPVFQCG NGHLACSSCC PKLRNKCPAC ALPVGHIRCR AMERVLESVL
101: VPCRYADLGC TKTIYYGRES THEKICNFSP CSCPVQGCNY TGSYKDLYEH YDLTHSTGST AYSFNGVSYI AAMMFISDKI LIERVYEKKL LFVVQCFEEP
201: CGVYVSVSCI APSAPEVGEF SYGLLYTTWE GVTMTYQSPK VKKVLKVSSQ RPKDSFMLIP HSLLCGPLLG MMLCINELKQ M
101: VPCRYADLGC TKTIYYGRES THEKICNFSP CSCPVQGCNY TGSYKDLYEH YDLTHSTGST AYSFNGVSYI AAMMFISDKI LIERVYEKKL LFVVQCFEEP
201: CGVYVSVSCI APSAPEVGEF SYGLLYTTWE GVTMTYQSPK VKKVLKVSSQ RPKDSFMLIP HSLLCGPLLG MMLCINELKQ M
Arabidopsis Description
Putative E3 ubiquitin-protein ligase SINA-like 6 [Source:UniProtKB/Swiss-Prot;Acc:Q9FKD9]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.