Factsheet for TraesCS2D01G564800.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

plastid 4
mitochondrion 1
nucleus 3

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS1A01G190800.1
TraesCS1B01G206000.1
TraesCS1D01G194800.2

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G37890.1	TraesCS1A01G190800.1	AT5G65940.1	21798944
AT5G37890.1	TraesCS1B01G206000.1	AT5G65940.1	21798944
AT5G37890.1	TraesCS1D01G194800.2	AT5G65940.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2B01G594500.1	Wheat	nucleus, plastid	98.13	98.13
TraesCS2A01G589200.1	Wheat	nucleus, plastid	97.07	97.59
HORVU2Hr1G118840.1	Barley	plastid	92.0	92.99
TraesCS2D01G600200.1	Wheat	nucleus	52.53	53.97
Os01t0123800-00	Rice	nucleus	35.47	34.46
EES02574	Sorghum	nucleus	38.4	32.14
TraesCS3D01G031300.1	Wheat	nucleus	20.8	28.47
TraesCS3D01G028800.1	Wheat	nucleus	15.73	27.57
Solyc03g036460.1.1	Tomato	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	14.93	25.34
CDY11709	Canola	nucleus	10.93	24.85
TraesCS3D01G504900.1	Wheat	nucleus	18.13	24.82
CDX99687	Canola	nucleus	18.4	24.38
CDY52473	Canola	nucleus	18.4	24.3
Bra025434.1-P	Field mustard	nucleus	18.4	24.3
AT5G37910.1	Thale cress	nucleus	17.87	24.28
AT5G37870.1	Thale cress	nucleus	18.13	24.2
TraesCS3D01G030300.1	Wheat	nucleus	19.2	24.08
KRH42263	Soybean	nucleus	20.53	24.06
PGSC0003DMT400043047	Potato	cytosol	11.73	23.91
TraesCS3D01G029000.1	Wheat	cytosol	17.87	23.76
KRH58384	Soybean	nucleus	20.0	23.44
CDY01699	Canola	nucleus, plastid	17.6	23.4
CDY10787	Canola	plastid	17.87	23.18
Bra018266.1-P	Field mustard	plastid	17.87	23.18
Bra000425.1-P	Field mustard	nucleus	17.33	22.97
TraesCS3D01G015600.1	Wheat	cytosol	18.13	22.9
CDY12498	Canola	nucleus	16.27	22.43
AT5G37900.1	Thale cress	nucleus	14.4	22.41
CDY25763	Canola	nucleus	16.0	22.06
AT5G37890.1	Thale cress	nucleus	16.8	22.03
CDX83363	Canola	cytosol, nucleus, plasma membrane	10.4	21.79
Bra012354.1-P	Field mustard	cytosol	15.73	21.69
CDY01695	Canola	nucleus	17.87	21.68
CDY01756	Canola	cytosol, nucleus, plastid	17.07	21.55
VIT_14s0006g01870.t01	Wine grape	cytosol	11.47	21.5
AT1G66630.1	Thale cress	cytosol	17.33	21.45
CDX95911	Canola	cytosol, nucleus, plastid	16.53	21.09
CDY47873	Canola	nucleus	18.13	20.99
Bra028395.1-P	Field mustard	nucleus	18.13	20.99
CDY27008	Canola	nucleus	18.4	20.97
AT1G66650.1	Thale cress	nucleus	18.4	20.97
Solyc03g034460.2.1	Tomato	nucleus	20.0	20.83
Bra004401.1-P	Field mustard	cytosol, mitochondrion, nucleus	14.93	20.82
Solyc03g034450.2.1	Tomato	nucleus	21.33	20.41
Bra022858.1-P	Field mustard	nucleus	16.53	20.39
CDY70665	Canola	nucleus	17.6	20.37
AT1G66620.1	Thale cress	nucleus	16.8	20.13
PGSC0003DMT400043050	Potato	nucleus	20.27	19.95
Bra004402.1-P	Field mustard	nucleus	16.53	19.56
TraesCS1D01G134000.1	Wheat	mitochondrion, nucleus, peroxisome, plasma membrane	13.07	19.44
Solyc03g042550.1.1	Tomato	nucleus	18.67	19.44
TraesCS4D01G356400.2	Wheat	nucleus	17.33	19.35
Bra019710.1-P	Field mustard	nucleus	17.6	19.3
AT5G37930.1	Thale cress	nucleus	17.87	19.2
AT1G66610.1	Thale cress	nucleus	18.67	19.13
TraesCS3D01G029300.1	Wheat	nucleus	17.07	18.82
Solyc03g042520.1.1	Tomato	nucleus	15.47	18.71
CDY36209	Canola	plastid	10.4	18.48
TraesCS3D01G020800.1	Wheat	cytosol, nucleus, plastid	13.6	18.48
TraesCS3D01G018100.1	Wheat	cytosol	13.07	18.28
CDX96138	Canola	nucleus	16.53	18.24
TraesCS5D01G504400.1	Wheat	cytosol	9.6	17.91
Bra004176.1-P	Field mustard	nucleus	16.0	17.8
TraesCS1D01G061700.1	Wheat	nucleus	16.53	17.61
TraesCS3D01G029600.1	Wheat	nucleus	15.73	17.61
TraesCS4D01G164700.1	Wheat	nucleus	14.13	17.61
TraesCS2D01G131700.1	Wheat	cytosol	13.87	17.28
AT5G62800.1	Thale cress	nucleus	16.0	17.24
CDX96140	Canola	cytosol, nucleus, plastid	15.73	16.91
CDY36211	Canola	nucleus	16.27	16.9
TraesCS7D01G340900.1	Wheat	cytosol, nucleus, peroxisome	15.2	16.72
Bra004174.1-P	Field mustard	nucleus	15.73	16.71
AT1G66660.2	Thale cress	nucleus	15.47	16.67
TraesCS3D01G018300.1	Wheat	mitochondrion	14.13	16.41
TraesCS3D01G165600.1	Wheat	cytoskeleton, nucleus, plasma membrane	14.13	16.31
TraesCS3D01G029700.1	Wheat	cytosol, mitochondrion, nucleus	10.93	14.39
TraesCS1D01G102900.1	Wheat	nucleus	14.13	13.87
TraesCS3D01G029400.1	Wheat	nucleus	16.8	13.73
CDY01757	Canola	cytosol	1.33	9.43
CDY01758	Canola	cytosol	9.33	8.01

Protein Annotations

Gene3D:3.30.40.10	MapMan:35.1	InterPro:7-in-absentia-prot_TRAF-dom	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006511	GO:GO:0007275
GO:GO:0008150	GO:GO:0008152	GO:GO:0008270	GO:GO:0009056	GO:GO:0009987	GO:GO:0019538
InterPro:IPR008974	InterPro:IPR013010	InterPro:IPR013083	PFAM:PF03145	PFscan:PS51081	PANTHER:PTHR10315
PANTHER:PTHR10315:SF44	InterPro:SINA-like	SUPFAM:SSF49599	InterPro:TRAF-like	EnsemblPlantsGene:TraesCS2D01G564800	EnsemblPlants:TraesCS2D01G564800.1
InterPro:Znf_RING/FYVE/PHD	InterPro:Znf_SIAH	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr2D:-:635092573..635093797

Molecular Weight (calculated)

42074.1 Da

IEP (calculated)

8.186

GRAVY (calculated)

-0.675

Length

375 amino acids

Sequence
(BLAST)

001: MSGSAAKRVG TPLADAEGSP KRPRSSRHPS LSPSPSQARS QAPSPSQSRS RSRSRSRLPL ARSSPPPYIG SPSYAPYDDR SPSRSHSRSY SHSRSRSRVS
101: EETDGNGRPV WRPHSYREHS GEHGDGEYSV RIGDYDRLFI CRSCHRMLSS PVYECPDGHV TCSRCRDNIG DNRCNYCAAN GCVRSRAVEE FLGRISFSCR
201: NQQYGCEVFL LHHEMRVHER TCHYDPCFCP VHRCGFAGPA YDLESHLATI HRWEVINFRY GESFQAPAFD SAIFRCEDYG ELFHISSSRE GLGTALSMIC
301: IRPDNAFEEE FTYELKMPAG GRHHRLQIQS TVWNTSLRYG IGEGSDVFLL VPDKLPGVEN GCAVEVCIRK VVAGN

Best Arabidopsis Sequence Match ( AT1G66620.1 )
(BLAST)

001: MSGEASTSRR KRQRVPSSVE SVENGGGDAV ARSGTLFELD LLDCPICCHA LTSPIFQCDN GHIACSSCCT KLRNKCPSCA LPIGNFRSRI MERVVEAVMV
101: TCPNVKHGCT EKFSYGKELI HEKDCRFALC YCPAPNCNYS GVYKDLYSHF YVNHYDTWNQ IGCGNFAGAW LRISEKILVL QYGQGPLIAV QCFKETQGMY
201: VTVNCIAPCA PGVGELSFEL SYKMPMGGNS TMMFKSEEMN RIQKVSFQTP EKDFMLVPYY FLGDFSTLKM EICIRKLKKD EEEADEDEES EEEEDDDDDD
301: DDDDEEEDAD EEE

Arabidopsis Description

E3 ubiquitin-protein ligase SINA-like 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9C6H3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.