Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| HORVU3Hr1G005260.1 | Barley | cytosol | 21.82 | 39.56 |
| CDY36209 | Canola | plastid | 40.0 | 31.28 |
| CDX99687 | Canola | nucleus | 53.33 | 31.1 |
| CDY52473 | Canola | nucleus | 53.33 | 30.99 |
| CDY01699 | Canola | nucleus, plastid | 51.52 | 30.14 |
| CDY10787 | Canola | plastid | 46.67 | 26.64 |
| CDY01695 | Canola | nucleus | 48.48 | 25.89 |
| CDX95911 | Canola | cytosol, nucleus, plastid | 44.85 | 25.17 |
| CDY12498 | Canola | nucleus | 40.61 | 24.63 |
| CDY25763 | Canola | nucleus | 40.61 | 24.63 |
| VIT_14s0006g01870.t01 | Wine grape | cytosol | 29.7 | 24.5 |
| CDX83363 | Canola | cytosol, nucleus, plasma membrane | 26.06 | 24.02 |
| CDY01756 | Canola | cytosol, nucleus, plastid | 43.03 | 23.91 |
| CDX96140 | Canola | cytosol, nucleus, plastid | 50.3 | 23.78 |
| TraesCS3D01G028800.1 | Wheat | nucleus | 30.3 | 23.36 |
| CDY47873 | Canola | nucleus | 45.45 | 23.15 |
| CDY27008 | Canola | nucleus | 45.45 | 22.8 |
| CDY70665 | Canola | nucleus | 38.79 | 19.75 |
| TraesCS3A01G030800.1 | Wheat | cytosol | 32.12 | 19.27 |
| KXG32008 | Sorghum | cytosol, nucleus, plastid | 30.91 | 19.17 |
| TraesCS3B01G053000.1 | Wheat | cytosol | 32.12 | 18.86 |
| TraesCS3B01G052800.1 | Wheat | cytosol | 32.12 | 18.79 |
| KXG32014 | Sorghum | nucleus | 24.85 | 18.64 |
| CDY67278 | Canola | cytosol | 9.09 | 18.52 |
| TraesCS3D01G029000.1 | Wheat | cytosol | 31.52 | 18.44 |
| KRH42263 | Soybean | nucleus | 35.15 | 18.12 |
| HORVU3Hr1G005320.1 | Barley | nucleus | 29.09 | 18.11 |
| TraesCS3A01G030600.1 | Wheat | nucleus | 30.91 | 18.09 |
| KXG37942 | Sorghum | cytosol, nucleus, plastid | 29.09 | 18.05 |
| TraesCS3D01G504900.1 | Wheat | nucleus | 29.7 | 17.88 |
| TraesCS3B01G052700.1 | Wheat | nucleus | 27.27 | 17.79 |
| TraesCS1A01G060800.1 | Wheat | nucleus | 32.73 | 17.59 |
| KXG32009 | Sorghum | nucleus | 31.52 | 17.57 |
| KRH58384 | Soybean | nucleus | 33.94 | 17.5 |
| HORVU3Hr1G004860.1 | Barley | cytosol | 26.67 | 17.46 |
| HORVU4Hr1G056260.1 | Barley | nucleus | 29.09 | 17.45 |
| HORVU3Hr1G004950.1 | Barley | nucleus | 31.52 | 17.33 |
| Solyc03g036460.1.1 | Tomato | cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole | 23.03 | 17.19 |
| TraesCS3B01G033800.1 | Wheat | nucleus | 28.48 | 17.15 |
| TraesCS3D01G031300.1 | Wheat | nucleus | 28.48 | 17.15 |
| CDX96138 | Canola | nucleus | 35.15 | 17.06 |
| TraesCS3B01G074800.1 | Wheat | cytosol | 28.48 | 16.97 |
| TraesCS3B01G560800.1 | Wheat | nucleus | 28.48 | 16.91 |
| TraesCS3A01G062700.1 | Wheat | nucleus | 27.88 | 16.73 |
| TraesCS3B01G053500.1 | Wheat | cytosol | 28.48 | 16.67 |
| TraesCS3B01G032100.1 | Wheat | cytosol | 28.48 | 16.55 |
| TraesCS5A01G228300.1 | Wheat | cytosol | 31.52 | 16.51 |
| OQU77422 | Sorghum | cytosol | 28.48 | 16.43 |
| TraesCS3A01G048300.1 | Wheat | nucleus | 27.27 | 16.42 |
| TraesCS3B01G050100.1 | Wheat | cytosol | 27.27 | 16.42 |
| TraesCS2A01G446400.1 | Wheat | cytosol, nucleus, plastid | 26.67 | 16.36 |
| TraesCS3A01G031100.1 | Wheat | cytosol | 26.67 | 16.36 |
| HORVU1Hr1G012490.3 | Barley | nucleus | 32.73 | 16.27 |
| TraesCS3B01G031200.1 | Wheat | nucleus | 28.48 | 16.1 |
| TraesCS3B01G053400.1 | Wheat | cytosol, nucleus, plastid | 28.48 | 16.04 |
| CDY14808 | Canola | cytosol | 29.09 | 15.89 |
| TraesCS3A01G062800.1 | Wheat | nucleus | 27.88 | 15.86 |
| CDY36211 | Canola | nucleus | 34.55 | 15.79 |
| CDY67927 | Canola | cytosol | 29.7 | 15.76 |
| PGSC0003DMT400043050 | Potato | nucleus | 36.36 | 15.75 |
| HORVU0Hr1G006120.2 | Barley | cytosol, nucleus, plastid | 26.67 | 15.71 |
| TraesCS3A01G031300.1 | Wheat | cytosol | 26.67 | 15.66 |
| TraesCS3B01G050700.1 | Wheat | nucleus | 29.09 | 15.64 |
| TraesCS3B01G052400.1 | Wheat | nucleus | 32.12 | 15.59 |
| CDY57244 | Canola | cytosol | 29.09 | 15.58 |
| Solyc03g034460.2.1 | Tomato | nucleus | 33.94 | 15.56 |
| Solyc03g042550.1.1 | Tomato | nucleus | 33.94 | 15.56 |
| CDY06889 | Canola | cytosol | 27.88 | 15.49 |
| CDX71977 | Canola | cytosol | 29.09 | 15.48 |
| CDX88968 | Canola | cytosol | 29.09 | 15.43 |
| TraesCS3D01G030300.1 | Wheat | nucleus | 27.88 | 15.38 |
| KXG37941 | Sorghum | cytosol | 26.06 | 15.36 |
| TraesCS1D01G061700.1 | Wheat | nucleus | 32.73 | 15.34 |
| HORVU3Hr1G004890.1 | Barley | nucleus | 27.88 | 15.33 |
| TraesCS3A01G032200.1 | Wheat | nucleus | 31.52 | 15.29 |
| TraesCS3D01G029300.1 | Wheat | nucleus | 31.52 | 15.29 |
| EES00387 | Sorghum | nucleus | 29.09 | 15.05 |
| HORVU3Hr1G004880.2 | Barley | nucleus | 30.91 | 15.04 |
| OQU78944 | Sorghum | nucleus | 29.7 | 15.03 |
| Zm00001d041049_P001 | Maize | nucleus | 29.7 | 14.98 |
| CDY35390 | Canola | nucleus | 27.88 | 14.98 |
| TraesCS3D01G029600.1 | Wheat | nucleus | 30.3 | 14.93 |
| CDY22549 | Canola | nucleus | 27.88 | 14.89 |
| CDY56244 | Canola | cytosol | 26.06 | 14.88 |
| TraesCS3B01G054400.1 | Wheat | cytosol | 26.67 | 14.81 |
| TraesCS3D01G015600.1 | Wheat | cytosol | 26.67 | 14.81 |
| CDY43950 | Canola | nucleus | 29.09 | 14.77 |
| CDX92848 | Canola | nucleus | 27.27 | 14.75 |
| EES17731 | Sorghum | nucleus | 30.91 | 14.74 |
| TraesCS3A01G031200.1 | Wheat | cytosol | 23.64 | 14.55 |
| Solyc03g034450.2.1 | Tomato | nucleus | 34.55 | 14.54 |
| CDX89132 | Canola | cytosol | 28.48 | 14.42 |
| TraesCS3B01G033700.1 | Wheat | nucleus | 25.45 | 14.38 |
| TraesCSU01G045900.1 | Wheat | cytosol | 26.06 | 14.38 |
| CDY14268 | Canola | nucleus | 27.88 | 14.38 |
| EES17728 | Sorghum | cytosol, mitochondrion, nucleus | 28.48 | 14.37 |
| CDX97399 | Canola | nucleus | 27.88 | 14.33 |
| TraesCS4B01G363200.1 | Wheat | nucleus | 28.48 | 14.33 |
| CDX89221 | Canola | nucleus | 27.88 | 14.29 |
| CDY19018 | Canola | nucleus | 27.88 | 14.29 |
| TraesCS3B01G028900.1 | Wheat | cytosol | 26.06 | 14.29 |
| CDX67865 | Canola | nucleus | 27.88 | 14.24 |
| CDY25077 | Canola | nucleus | 27.88 | 14.24 |
| TraesCS3B01G050200.1 | Wheat | nucleus | 21.21 | 14.17 |
| TraesCS3A01G030100.1 | Wheat | nucleus | 25.45 | 14.14 |
| TraesCS5A01G531400.2 | Wheat | nucleus | 27.88 | 13.9 |
| Solyc03g042520.1.1 | Tomato | nucleus | 26.06 | 13.87 |
| TraesCS4D01G356400.2 | Wheat | nucleus | 27.88 | 13.69 |
| CDY06056 | Canola | cytosol | 21.21 | 13.36 |
| HORVU0Hr1G006130.1 | Barley | nucleus | 26.67 | 13.33 |
| PGSC0003DMT400043047 | Potato | cytosol | 14.55 | 13.04 |
| TraesCS3B01G050900.1 | Wheat | cytosol | 23.03 | 13.01 |
| OQU77414 | Sorghum | mitochondrion, nucleus | 27.88 | 12.99 |
| HORVU4Hr1G087120.3 | Barley | nucleus | 27.88 | 12.85 |
| CDY01758 | Canola | cytosol | 33.94 | 12.81 |
| KXG21322 | Sorghum | nucleus | 27.27 | 12.03 |
| OQU77425 | Sorghum | nucleus | 27.27 | 11.97 |
| HORVU2Hr1G118560.2 | Barley | nucleus | 20.0 | 11.79 |
| TraesCS3B01G032300.1 | Wheat | cytosol | 13.94 | 11.5 |
| HORVU3Hr1G005270.1 | Barley | nucleus | 23.64 | 11.44 |
| EES17735 | Sorghum | mitochondrion | 30.91 | 11.36 |
| TraesCS3B01G031100.1 | Wheat | nucleus | 27.88 | 11.36 |
| TraesCSU01G231400.1 | Wheat | nucleus | 23.64 | 11.27 |
| TraesCS1D01G102900.1 | Wheat | nucleus | 26.06 | 11.26 |
| TraesCS3A01G032100.1 | Wheat | nucleus | 30.91 | 11.18 |
| TraesCS2A01G589200.1 | Wheat | nucleus, plastid | 24.85 | 10.99 |
| TraesCS2B01G594500.1 | Wheat | nucleus, plastid | 24.85 | 10.93 |
| TraesCS2D01G564800.1 | Wheat | nucleus, plastid | 24.85 | 10.93 |
| TraesCS3D01G029400.1 | Wheat | nucleus | 29.7 | 10.68 |
| TraesCS3B01G052300.1 | Wheat | nucleus | 29.7 | 10.56 |
| HORVU2Hr1G118840.1 | Barley | plastid | 23.64 | 10.51 |
| TraesCS3D01G029700.1 | Wheat | cytosol, mitochondrion, nucleus | 17.58 | 10.18 |
| CDX82523 | Canola | cytosol | 12.73 | 9.81 |
| TraesCS2A01G586400.1 | Wheat | nucleus | 21.21 | 9.59 |
| TraesCS2D01G600200.1 | Wheat | nucleus | 21.21 | 9.59 |
| TraesCSU01G021700.1 | Wheat | nucleus | 21.21 | 9.59 |
| CDX75727 | Canola | cytosol | 12.12 | 9.35 |
| CDY67900 | Canola | cytosol, endoplasmic reticulum, plastid | 15.15 | 9.06 |
| OQU86453 | Sorghum | cytosol | 11.52 | 8.88 |
| EES02574 | Sorghum | nucleus | 23.64 | 8.71 |
| CDY14650 | Canola | cytosol, nucleus, plastid | 11.52 | 8.6 |
| CDY38819 | Canola | nucleus | 9.7 | 8.25 |
| TraesCS1A01G070000.1 | Wheat | plastid | 10.91 | 7.41 |
| CDY01757 | Canola | cytosol | 1.21 | 3.77 |
| CDY67899 | Canola | cytosol, plastid | 3.03 | 3.01 |
| CDY64066 | Canola | cytosol | 1.82 | 2.78 |
| Os05t0152700-00 | Rice | cytosol, extracellular | 0.61 | 1.01 |
Protein Annotations
| KEGG:00220+6.3.2.- | KEGG:00261+6.3.2.- | KEGG:00380+6.3.2.- | MapMan:19.2.2.1.5.3.5 | Gene3D:3.30.40.10 | InterPro:7-in-absentia-prot_TRAF-dom |
| GO:A0A078FFG9 | UniProt:A0A078FFG9 | EnsemblPlants:CDY11709 | ProteinID:CDY11709 | ProteinID:CDY11709.1 | GO:GO:0003674 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0006464 | GO:GO:0006511 | GO:GO:0007275 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008270 |
| GO:GO:0009056 | GO:GO:0009987 | GO:GO:0016567 | GO:GO:0019538 | GO:GO:0046872 | EnsemblPlantsGene:GSBRNA2T00049900001 |
| InterPro:IPR008974 | InterPro:IPR013010 | InterPro:IPR013083 | PFAM:PF03145 | PFscan:PS51081 | PANTHER:PTHR10315 |
| PANTHER:PTHR10315:SF43 | InterPro:SINA-like | SUPFAM:SSF49599 | InterPro:TRAF-like | UniPathway:UPA00143 | UniParc:UPI0004EDFB30 |
| InterPro:Znf_RING/FYVE/PHD | InterPro:Znf_SIAH | : | : | : | : |
Description
BnaC06g13170DE3 ubiquitin-protein ligase [Source:UniProtKB/TrEMBL;Acc:A0A078FFG9]
Coordinates
chrLK032013:+:629958..630630
Molecular Weight (calculated)
18578.2 Da
IEP (calculated)
5.904
GRAVY (calculated)
-0.184
Length
165 amino acids
Sequence
(BLAST)
(BLAST)
001: MEQASSDESC SSNIHLRNRQ RTKDNIRSAT VDVDVLDCPV CFEPLTIPIF QCDNRHMVCS SCCSKLRYIF PTCASPIGHI RCRGMETVIE SVFLPCINAE
101: LGCAEKVSFL KESTHKKECS FSLCSCPVQD CNYTGSYTDL YDHYATYTHQ DSMGRGVLEN LMVCM
101: LGCAEKVSFL KESTHKKECS FSLCSCPVQD CNYTGSYTDL YDHYATYTHQ DSMGRGVLEN LMVCM
001: MVGVLLSERN GSQKRHCSSI SSDDGRKRVD KTRSAMLTDL DILDCPICYQ ALKIPVFQCG NGHLACSSCC PKLRNKCPAC ALPVGHIRCR AMERVLESVL
101: VPCRYADLGC TKTIYYGRES THEKICNFSP CSCPVQGCNY TGSYKDLYEH YDLTHSTGST AYSFNGVSYI AAMMFISDKI LIERVYEKKL LFVVQCFEEP
201: CGVYVSVSCI APSAPEVGEF SYGLLYTTWE GVTMTYQSPK VKKVLKVSSQ RPKDSFMLIP HSLLCGPLLG MMLCINELKQ M
101: VPCRYADLGC TKTIYYGRES THEKICNFSP CSCPVQGCNY TGSYKDLYEH YDLTHSTGST AYSFNGVSYI AAMMFISDKI LIERVYEKKL LFVVQCFEEP
201: CGVYVSVSCI APSAPEVGEF SYGLLYTTWE GVTMTYQSPK VKKVLKVSSQ RPKDSFMLIP HSLLCGPLLG MMLCINELKQ M
Arabidopsis Description
Putative E3 ubiquitin-protein ligase SINA-like 6 [Source:UniProtKB/Swiss-Prot;Acc:Q9FKD9]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.