Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 2
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| TraesCS1A01G190800.1 | |
| TraesCS1B01G206000.1 | |
| TraesCS1D01G194800.2 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G37890.1 | TraesCS1A01G190800.1 | AT5G65940.1 | 21798944 |
| AT5G37890.1 | TraesCS1B01G206000.1 | AT5G65940.1 | 21798944 |
| AT5G37890.1 | TraesCS1D01G194800.2 | AT5G65940.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3B01G033700.1 | Wheat | nucleus | 80.16 | 67.81 |
| TraesCS3B01G050700.1 | Wheat | nucleus | 46.96 | 37.78 |
| TraesCS3B01G033800.1 | Wheat | nucleus | 41.3 | 37.23 |
| TraesCS3B01G050100.1 | Wheat | cytosol | 41.3 | 37.23 |
| TraesCS3B01G050900.1 | Wheat | cytosol | 42.51 | 35.96 |
| TraesCS3B01G031200.1 | Wheat | nucleus | 34.41 | 29.11 |
| TraesCS3B01G053400.1 | Wheat | cytosol, nucleus, plastid | 33.2 | 27.99 |
| KXG32009 | Sorghum | nucleus | 33.2 | 27.7 |
| TraesCS3B01G053500.1 | Wheat | cytosol | 31.58 | 27.66 |
| TraesCS3B01G074800.1 | Wheat | cytosol | 30.36 | 27.08 |
| TraesCS3B01G560800.1 | Wheat | nucleus | 30.36 | 26.98 |
| Os01t0125500-00 | Rice | mitochondrion | 29.96 | 26.33 |
| TraesCS3B01G052800.1 | Wheat | cytosol | 29.96 | 26.24 |
| TraesCS3B01G053000.1 | Wheat | cytosol | 29.15 | 25.62 |
| TraesCS3B01G032300.1 | Wheat | cytosol | 20.65 | 25.5 |
| TraesCS3B01G032100.1 | Wheat | cytosol | 28.74 | 25.0 |
| Os01t0761900-00 | Rice | cytosol | 16.19 | 24.54 |
| TraesCS3B01G052700.1 | Wheat | nucleus | 21.86 | 21.34 |
| CDY11709 | Canola | nucleus | 14.17 | 21.21 |
| Bra025434.1-P | Field mustard | nucleus | 23.48 | 20.42 |
| Solyc03g036460.1.1 | Tomato | cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole | 18.22 | 20.36 |
| TraesCS3B01G028900.1 | Wheat | cytosol | 24.29 | 19.93 |
| CDY12498 | Canola | nucleus | 21.86 | 19.85 |
| CDY52473 | Canola | nucleus | 22.67 | 19.72 |
| PGSC0003DMT400043047 | Potato | cytosol | 14.57 | 19.57 |
| TraesCS3B01G054400.1 | Wheat | cytosol | 23.48 | 19.53 |
| CDX99687 | Canola | nucleus | 22.27 | 19.43 |
| CDY36209 | Canola | plastid | 16.6 | 19.43 |
| CDY25763 | Canola | nucleus | 21.05 | 19.12 |
| Bra012354.1-P | Field mustard | cytosol | 21.05 | 19.12 |
| KRH42263 | Soybean | nucleus | 24.29 | 18.75 |
| AT5G37910.1 | Thale cress | nucleus | 20.65 | 18.48 |
| CDY01695 | Canola | nucleus | 23.08 | 18.45 |
| Bra004401.1-P | Field mustard | cytosol, mitochondrion, nucleus | 19.84 | 18.22 |
| AT1G66630.1 | Thale cress | cytosol | 22.27 | 18.15 |
| KRH58384 | Soybean | nucleus | 23.48 | 18.12 |
| Bra000425.1-P | Field mustard | nucleus | 20.65 | 18.02 |
| VIT_14s0006g01870.t01 | Wine grape | cytosol | 14.57 | 18.0 |
| TraesCS3B01G052400.1 | Wheat | nucleus | 24.7 | 17.94 |
| AT5G37890.1 | Thale cress | nucleus | 20.65 | 17.83 |
| AT5G37870.1 | Thale cress | nucleus | 20.24 | 17.79 |
| CDX95911 | Canola | cytosol, nucleus, plastid | 21.05 | 17.69 |
| TraesCS4B01G363200.1 | Wheat | nucleus | 23.48 | 17.68 |
| Bra022858.1-P | Field mustard | nucleus | 21.46 | 17.43 |
| AT5G37900.1 | Thale cress | nucleus | 17.0 | 17.43 |
| CDY01699 | Canola | nucleus, plastid | 19.43 | 17.02 |
| CDY01756 | Canola | cytosol, nucleus, plastid | 20.24 | 16.84 |
| TraesCS3B01G031100.1 | Wheat | nucleus | 27.53 | 16.79 |
| CDY27008 | Canola | nucleus | 22.27 | 16.72 |
| CDY47873 | Canola | nucleus | 21.86 | 16.67 |
| Bra028395.1-P | Field mustard | nucleus | 21.86 | 16.67 |
| AT1G66620.1 | Thale cress | nucleus | 21.05 | 16.61 |
| TraesCS3B01G185000.1 | Wheat | cytoskeleton, nucleus, plasma membrane | 21.86 | 16.51 |
| TraesCS3B01G442300.1 | Wheat | cytosol | 18.22 | 16.42 |
| AT1G66650.1 | Thale cress | nucleus | 21.86 | 16.41 |
| Bra004402.1-P | Field mustard | nucleus | 21.05 | 16.4 |
| TraesCS3B01G052300.1 | Wheat | nucleus | 30.77 | 16.38 |
| CDX83363 | Canola | cytosol, nucleus, plasma membrane | 11.74 | 16.2 |
| Bra004174.1-P | Field mustard | nucleus | 23.08 | 16.15 |
| Solyc03g042550.1.1 | Tomato | nucleus | 23.48 | 16.11 |
| Solyc03g034460.2.1 | Tomato | nucleus | 23.48 | 16.11 |
| TraesCS6B01G114800.1 | Wheat | nucleus | 20.24 | 16.08 |
| CDX96140 | Canola | cytosol, nucleus, plastid | 22.67 | 16.05 |
| TraesCS3B01G018000.2 | Wheat | cytosol | 17.41 | 15.81 |
| Solyc03g034450.2.1 | Tomato | nucleus | 24.7 | 15.56 |
| AT5G37930.1 | Thale cress | nucleus | 21.86 | 15.47 |
| TraesCS7B01G244800.1 | Wheat | cytosol, nucleus, peroxisome | 21.05 | 15.25 |
| CDY10787 | Canola | plastid | 17.81 | 15.22 |
| Bra018266.1-P | Field mustard | plastid | 17.81 | 15.22 |
| PGSC0003DMT400043050 | Potato | nucleus | 23.48 | 15.22 |
| AT5G62800.1 | Thale cress | nucleus | 21.05 | 14.94 |
| CDY70665 | Canola | nucleus | 19.43 | 14.81 |
| AT1G66660.2 | Thale cress | nucleus | 20.65 | 14.66 |
| Bra019710.1-P | Field mustard | nucleus | 20.24 | 14.62 |
| CDY36211 | Canola | nucleus | 21.05 | 14.4 |
| TraesCS2B01G151100.1 | Wheat | plasma membrane | 20.24 | 14.29 |
| Bra004176.1-P | Field mustard | nucleus | 19.43 | 14.24 |
| TraesCS2B01G594500.1 | Wheat | nucleus, plastid | 21.46 | 14.13 |
| CDX96138 | Canola | nucleus | 19.03 | 13.82 |
| TraesCS1B01G152800.1 | Wheat | plastid | 21.46 | 13.02 |
| AT1G66610.1 | Thale cress | nucleus | 19.03 | 12.84 |
| Solyc03g042520.1.1 | Tomato | nucleus | 15.38 | 12.26 |
| TraesCS3B01G019600.1 | Wheat | plastid | 15.38 | 12.03 |
| CDY01758 | Canola | cytosol | 14.57 | 8.24 |
| CDY01757 | Canola | cytosol | 0.81 | 3.77 |
Protein Annotations
| Gene3D:3.30.40.10 | MapMan:35.2 | InterPro:7-in-absentia-prot_TRAF-dom | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006511 | GO:GO:0007275 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008270 | GO:GO:0009056 | GO:GO:0009987 | GO:GO:0019538 |
| InterPro:IPR008974 | InterPro:IPR013010 | InterPro:IPR013083 | PFAM:PF03145 | PFscan:PS51081 | PANTHER:PTHR10315 |
| PANTHER:PTHR10315:SF43 | InterPro:SINA-like | SUPFAM:SSF49599 | InterPro:TRAF-like | EnsemblPlantsGene:TraesCS3B01G050200 | EnsemblPlants:TraesCS3B01G050200.1 |
| InterPro:Znf_RING/FYVE/PHD | InterPro:Znf_SIAH | SEG:seg | : | : | : |
Description
No Description!
Coordinates
chr3B:-:25179852..25181748
Molecular Weight (calculated)
27165.5 Da
IEP (calculated)
8.209
GRAVY (calculated)
-0.316
Length
247 amino acids
Sequence
(BLAST)
(BLAST)
001: MEEEKESGDG ERAREGEPRR LEKTNTSAAS NGSIELDLLD CTICMDPLRP PVRSSSLPNK DSCHMCTATG GYSRCIALDK ILESFCVPCS NAVYGCTVKT
101: LYYKAEDHHN SCPQVPCFCP GHACSFAGTT VNLLAHLTGD HKWKSKEVKY DAKFTLPVKE GTWVLHARDQ APLFLVKFTP AAFGQCCLRP VRSTNLSDGL
201: LFTENDGSSL FASSTRSITV SIMKIVRDKR KRGKAMRQSM LPFVAAS
101: LYYKAEDHHN SCPQVPCFCP GHACSFAGTT VNLLAHLTGD HKWKSKEVKY DAKFTLPVKE GTWVLHARDQ APLFLVKFTP AAFGQCCLRP VRSTNLSDGL
201: LFTENDGSSL FASSTRSITV SIMKIVRDKR KRGKAMRQSM LPFVAAS
001: MVGVLLSERN GSQKRHCSSI SSDDGRKRVD KTRSAMLTDL DILDCPICYQ ALKIPVFQCG NGHLACSSCC PKLRNKCPAC ALPVGHIRCR AMERVLESVL
101: VPCRYADLGC TKTIYYGRES THEKICNFSP CSCPVQGCNY TGSYKDLYEH YDLTHSTGST AYSFNGVSYI AAMMFISDKI LIERVYEKKL LFVVQCFEEP
201: CGVYVSVSCI APSAPEVGEF SYGLLYTTWE GVTMTYQSPK VKKVLKVSSQ RPKDSFMLIP HSLLCGPLLG MMLCINELKQ M
101: VPCRYADLGC TKTIYYGRES THEKICNFSP CSCPVQGCNY TGSYKDLYEH YDLTHSTGST AYSFNGVSYI AAMMFISDKI LIERVYEKKL LFVVQCFEEP
201: CGVYVSVSCI APSAPEVGEF SYGLLYTTWE GVTMTYQSPK VKKVLKVSSQ RPKDSFMLIP HSLLCGPLLG MMLCINELKQ M
Arabidopsis Description
Putative E3 ubiquitin-protein ligase SINA-like 6 [Source:UniProtKB/Swiss-Prot;Acc:Q9FKD9]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.