Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 2
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| TraesCS1A01G190800.1 | |
| TraesCS1B01G206000.1 | |
| TraesCS1D01G194800.2 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G37890.1 | TraesCS1A01G190800.1 | AT5G65940.1 | 21798944 |
| AT5G37890.1 | TraesCS1B01G206000.1 | AT5G65940.1 | 21798944 |
| AT5G37890.1 | TraesCS1D01G194800.2 | AT5G65940.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3B01G053400.1 | Wheat | cytosol, nucleus, plastid | 93.49 | 93.17 |
| TraesCS3B01G053500.1 | Wheat | cytosol | 73.97 | 76.6 |
| TraesCS3B01G560800.1 | Wheat | nucleus | 60.96 | 64.03 |
| KXG32008 | Sorghum | cytosol, nucleus, plastid | 56.85 | 62.41 |
| TraesCS3A01G031100.1 | Wheat | cytosol | 55.82 | 60.59 |
| TraesCS3B01G074800.1 | Wheat | cytosol | 54.11 | 57.04 |
| TraesCS3B01G050100.1 | Wheat | cytosol | 35.27 | 37.59 |
| TraesCS3B01G033800.1 | Wheat | nucleus | 34.59 | 36.86 |
| TraesCS3B01G033700.1 | Wheat | nucleus | 36.64 | 36.64 |
| TraesCS3B01G053000.1 | Wheat | cytosol | 34.59 | 35.94 |
| TraesCS3B01G052800.1 | Wheat | cytosol | 34.25 | 35.46 |
| TraesCS3B01G050900.1 | Wheat | cytosol | 35.27 | 35.27 |
| TraesCS3B01G050200.1 | Wheat | nucleus | 29.11 | 34.41 |
| TraesCS3B01G032300.1 | Wheat | cytosol | 23.29 | 34.0 |
| TraesCS3B01G052700.1 | Wheat | nucleus | 29.45 | 33.99 |
| TraesCS3B01G032100.1 | Wheat | cytosol | 32.88 | 33.8 |
| TraesCS3B01G050700.1 | Wheat | nucleus | 33.9 | 32.25 |
| Solyc03g036460.1.1 | Tomato | cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole | 22.6 | 29.86 |
| TraesCS3B01G028900.1 | Wheat | cytosol | 29.79 | 28.9 |
| TraesCS3B01G054400.1 | Wheat | cytosol | 29.11 | 28.62 |
| CDY11709 | Canola | nucleus | 16.1 | 28.48 |
| PGSC0003DMT400043047 | Potato | cytosol | 17.47 | 27.72 |
| CDY12498 | Canola | nucleus | 24.66 | 26.47 |
| TraesCS3B01G052400.1 | Wheat | nucleus | 30.48 | 26.18 |
| CDY01699 | Canola | nucleus, plastid | 25.0 | 25.89 |
| Bra012354.1-P | Field mustard | cytosol | 23.97 | 25.74 |
| CDY25763 | Canola | nucleus | 23.97 | 25.74 |
| KRH42263 | Soybean | nucleus | 28.08 | 25.62 |
| AT5G37870.1 | Thale cress | nucleus | 24.66 | 25.62 |
| CDY36209 | Canola | plastid | 18.49 | 25.59 |
| Bra025434.1-P | Field mustard | nucleus | 24.32 | 25.0 |
| Bra004401.1-P | Field mustard | cytosol, mitochondrion, nucleus | 22.95 | 24.91 |
| KRH58384 | Soybean | nucleus | 27.05 | 24.69 |
| CDY52473 | Canola | nucleus | 23.97 | 24.65 |
| AT1G66630.1 | Thale cress | cytosol | 25.0 | 24.09 |
| CDX99687 | Canola | nucleus | 23.29 | 24.03 |
| AT5G37890.1 | Thale cress | nucleus | 23.29 | 23.78 |
| AT5G37900.1 | Thale cress | nucleus | 19.52 | 23.65 |
| AT5G37910.1 | Thale cress | nucleus | 22.26 | 23.55 |
| VIT_14s0006g01870.t01 | Wine grape | cytosol | 16.1 | 23.5 |
| CDX95911 | Canola | cytosol, nucleus, plastid | 23.63 | 23.47 |
| Bra022858.1-P | Field mustard | nucleus | 24.32 | 23.36 |
| CDY01756 | Canola | cytosol, nucleus, plastid | 23.63 | 23.23 |
| Solyc03g034460.2.1 | Tomato | nucleus | 28.08 | 22.78 |
| AT1G66620.1 | Thale cress | nucleus | 24.32 | 22.68 |
| Bra000425.1-P | Field mustard | nucleus | 21.92 | 22.61 |
| Solyc03g042550.1.1 | Tomato | nucleus | 27.74 | 22.5 |
| Bra018266.1-P | Field mustard | plastid | 22.26 | 22.49 |
| CDY10787 | Canola | plastid | 22.26 | 22.49 |
| TraesCS3B01G442300.1 | Wheat | cytosol | 20.89 | 22.26 |
| TraesCS4B01G363200.1 | Wheat | nucleus | 25.0 | 22.26 |
| CDY47873 | Canola | nucleus | 24.66 | 22.22 |
| Bra028395.1-P | Field mustard | nucleus | 24.66 | 22.22 |
| Bra004402.1-P | Field mustard | nucleus | 23.63 | 21.77 |
| TraesCS3B01G018000.2 | Wheat | cytosol | 20.21 | 21.69 |
| Bra004174.1-P | Field mustard | nucleus | 26.03 | 21.53 |
| CDX96140 | Canola | cytosol, nucleus, plastid | 25.68 | 21.49 |
| Solyc03g042520.1.1 | Tomato | nucleus | 22.6 | 21.29 |
| TraesCS3B01G031100.1 | Wheat | nucleus | 29.45 | 21.23 |
| PGSC0003DMT400043050 | Potato | nucleus | 27.4 | 21.0 |
| CDY27008 | Canola | nucleus | 23.63 | 20.97 |
| TraesCS3B01G052300.1 | Wheat | nucleus | 33.22 | 20.91 |
| CDY01695 | Canola | nucleus | 21.92 | 20.71 |
| AT5G62800.1 | Thale cress | nucleus | 24.66 | 20.69 |
| Solyc03g034450.2.1 | Tomato | nucleus | 27.74 | 20.66 |
| TraesCS6B01G114800.1 | Wheat | nucleus | 21.92 | 20.58 |
| AT1G66650.1 | Thale cress | nucleus | 22.95 | 20.36 |
| TraesCS3B01G019600.1 | Wheat | plastid | 21.92 | 20.25 |
| AT5G37930.1 | Thale cress | nucleus | 23.63 | 19.77 |
| CDX83363 | Canola | cytosol, nucleus, plasma membrane | 11.64 | 18.99 |
| AT1G66610.1 | Thale cress | nucleus | 23.63 | 18.85 |
| CDY70665 | Canola | nucleus | 20.89 | 18.83 |
| Bra019710.1-P | Field mustard | nucleus | 21.58 | 18.42 |
| Bra004176.1-P | Field mustard | nucleus | 20.55 | 17.8 |
| CDX96138 | Canola | nucleus | 20.55 | 17.65 |
| TraesCS2B01G594500.1 | Wheat | nucleus, plastid | 22.26 | 17.33 |
| TraesCS2B01G151100.1 | Wheat | plasma membrane | 20.55 | 17.14 |
| TraesCS7B01G244800.1 | Wheat | cytosol, nucleus, peroxisome | 19.86 | 17.01 |
| AT1G66660.2 | Thale cress | nucleus | 20.21 | 16.95 |
| CDY36211 | Canola | nucleus | 20.89 | 16.9 |
| TraesCS3B01G185000.1 | Wheat | cytoskeleton, nucleus, plasma membrane | 18.49 | 16.51 |
| TraesCS1B01G152800.1 | Wheat | plastid | 19.86 | 14.25 |
| CDY01758 | Canola | cytosol | 15.07 | 10.07 |
| CDY01757 | Canola | cytosol | 1.71 | 9.43 |
Protein Annotations
| MapMan:19.2.2.1.5.3.5 | Gene3D:3.30.40.10 | InterPro:7-in-absentia-prot_TRAF-dom | ncoils:Coil | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006511 |
| GO:GO:0007275 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008270 | GO:GO:0009056 | GO:GO:0009987 |
| GO:GO:0019538 | InterPro:IPR008974 | InterPro:IPR013010 | InterPro:IPR013083 | PFAM:PF03145 | PFscan:PS51081 |
| PANTHER:PTHR10315 | PANTHER:PTHR10315:SF43 | InterPro:SINA-like | SUPFAM:SSF49599 | InterPro:TRAF-like | EnsemblPlantsGene:TraesCS3B01G031200 |
| EnsemblPlants:TraesCS3B01G031200.1 | InterPro:Znf_RING/FYVE/PHD | InterPro:Znf_SIAH | SEG:seg | : | : |
Description
No Description!
Coordinates
chr3B:-:14201533..14204974
Molecular Weight (calculated)
32232.8 Da
IEP (calculated)
7.739
GRAVY (calculated)
-0.247
Length
292 amino acids
Sequence
(BLAST)
(BLAST)
001: MAAHVYLPVG HLPPWTRLPE EKEEGMRAQQ QEKEAEKEGG GGGKRRKVAA DVTIDLDILD CPVCYQPLRP PIFQCTVGHT ISSSCHNKLP EKCHFCSLPT
101: VYNRCHMVEH LVESIKVACS NCNHGCTARI SYYQKEDHEK GCPHAPCFCP ETDCGFSGPT AVLLEHFSGK HKWHSPKVTY NKAFRIRIHV GSTVLVGEDG
201: NLFLVNMTME SRGGVISVCS VQPHSTGSSF RCKLTLSCTE PSFSQSMEFL IRSTNLYDGF PKDCFQFLVP KVLLRGAGTS ATAMVGVTVT PQ
101: VYNRCHMVEH LVESIKVACS NCNHGCTARI SYYQKEDHEK GCPHAPCFCP ETDCGFSGPT AVLLEHFSGK HKWHSPKVTY NKAFRIRIHV GSTVLVGEDG
201: NLFLVNMTME SRGGVISVCS VQPHSTGSSF RCKLTLSCTE PSFSQSMEFL IRSTNLYDGF PKDCFQFLVP KVLLRGAGTS ATAMVGVTVT PQ
001: MEDSNSHPQN QTSKRKSSHP QKKQRMENET RSAKLLDLDV LDCPVCFEPL TIPTFQCDDG HIVCNFCFAK VSNKCPGPGC DLPIGNKRCF AMERVLESAF
101: VPCQNTEFGC TKSVSYEKVS SHEKECNYSQ CSCPNLECNY TGSYNIIYGH FMRRHLYNST IVSSKWGYST VDVLINIKEK VSVLWESRQK LLFVVQCFKE
201: RHGVYVTVRR IAPPASEFKK FSYRLSYSID GHNVTYESPE VKRLLEVNSQ IPDDSFMFVP NCLLHGEMLE LKLGIKKLKQ TCIIQKLSGL VPGSVLYIVG
301: FLIKPANEVQ QVTIAQETVM EDPPTSLFKN SVPIREDQIQ NAITNSIR
101: VPCQNTEFGC TKSVSYEKVS SHEKECNYSQ CSCPNLECNY TGSYNIIYGH FMRRHLYNST IVSSKWGYST VDVLINIKEK VSVLWESRQK LLFVVQCFKE
201: RHGVYVTVRR IAPPASEFKK FSYRLSYSID GHNVTYESPE VKRLLEVNSQ IPDDSFMFVP NCLLHGEMLE LKLGIKKLKQ TCIIQKLSGL VPGSVLYIVG
301: FLIKPANEVQ QVTIAQETVM EDPPTSLFKN SVPIREDQIQ NAITNSIR
Arabidopsis Description
Protein with RING/U-box and TRAF-like domains [Source:TAIR;Acc:AT5G62800]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.