CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, nucleus, cytosol

Predictor Summary:

nucleus 3
mitochondrion 2
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
EER91893
EES03677
EES05173
KXG29172
OQU84058

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G37890.1	EES03677	AT2G27580.1	21798944
AT5G37890.1	EES05173	AT2G27580.1	21798944
AT5G37890.1	EER91893	AT5G65940.1	21798944
AT5G37890.1	KXG29172	AT5G65940.1	21798944
AT5G37890.1	OQU84058	AT5G65940.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2A01G446400.1	Wheat	cytosol, nucleus, plastid	35.17	42.75
OQU77422	Sorghum	cytosol	34.86	39.86
EES17731	Sorghum	nucleus	40.98	38.73
OQU77414	Sorghum	mitochondrion, nucleus	41.9	38.7
KXG21322	Sorghum	nucleus	41.28	36.1
OQU77425	Sorghum	nucleus	40.37	35.11
KXG32008	Sorghum	cytosol, nucleus, plastid	28.13	34.59
KXG37942	Sorghum	cytosol, nucleus, plastid	24.46	30.08
KXG32009	Sorghum	nucleus	26.61	29.39
CDY11709	Canola	nucleus	14.37	28.48
CDY36209	Canola	plastid	17.43	27.01
KXG37941	Sorghum	cytosol	22.94	26.79
EES00387	Sorghum	nucleus	25.38	26.02
TraesCS1D01G102900.1	Wheat	nucleus	30.28	25.92
EES17735	Sorghum	mitochondrion	35.47	25.84
CDY12498	Canola	nucleus	21.1	25.37
CDY25763	Canola	nucleus	20.49	24.63
Bra012354.1-P	Field mustard	cytosol	20.49	24.63
Solyc03g036460.1.1	Tomato	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	16.51	24.43
Bra025434.1-P	Field mustard	nucleus	21.1	24.3
CDY52473	Canola	nucleus	21.1	24.3
AT5G37870.1	Thale cress	nucleus	20.49	23.84
CDX99687	Canola	nucleus	20.49	23.67
AT5G37910.1	Thale cress	nucleus	19.88	23.55
KXG32011	Sorghum	cytosol	17.43	23.46
PGSC0003DMT400043047	Potato	cytosol	13.15	23.37
Bra000425.1-P	Field mustard	nucleus	19.88	22.97
KXG32014	Sorghum	nucleus	15.29	22.73
KXG32010	Sorghum	extracellular	16.82	22.45
OQU86453	Sorghum	cytosol	14.68	22.43
AT5G37890.1	Thale cress	nucleus	19.27	22.03
CDY01699	Canola	nucleus, plastid	18.96	21.99
CDY10787	Canola	plastid	18.96	21.45
Bra018266.1-P	Field mustard	plastid	18.96	21.45
AT1G66620.1	Thale cress	nucleus	20.49	21.41
Bra022858.1-P	Field mustard	nucleus	19.88	21.38
CDY47873	Canola	nucleus	21.1	21.3
KRH58384	Soybean	nucleus	20.8	21.25
Bra004401.1-P	Field mustard	cytosol, mitochondrion, nucleus	17.43	21.19
AT1G66630.1	Thale cress	cytosol	19.57	21.12
CDY01695	Canola	nucleus	19.88	21.04
Bra028395.1-P	Field mustard	nucleus	20.8	20.99
KRH42263	Soybean	nucleus	20.49	20.94
CDX83363	Canola	cytosol, nucleus, plasma membrane	11.31	20.67
CDX95911	Canola	cytosol, nucleus, plastid	18.35	20.41
CDY27008	Canola	nucleus	20.49	20.36
AT5G37900.1	Thale cress	nucleus	14.98	20.33
VIT_14s0006g01870.t01	Wine grape	cytosol	12.23	20.0
OQU78944	Sorghum	nucleus	19.88	19.94
CDY01756	Canola	cytosol, nucleus, plastid	17.74	19.53
AT5G37930.1	Thale cress	nucleus	20.8	19.48
PGSC0003DMT400043050	Potato	nucleus	22.63	19.42
AT1G66660.2	Thale cress	nucleus	20.49	19.25
CDY70665	Canola	nucleus	18.96	19.14
KXG32028	Sorghum	plastid	19.57	19.05
AT5G62800.1	Thale cress	nucleus	20.18	18.97
Solyc03g042550.1.1	Tomato	nucleus	20.8	18.89
Solyc03g034460.2.1	Tomato	nucleus	20.8	18.89
Bra004402.1-P	Field mustard	nucleus	18.04	18.61
KXG32085	Sorghum	nucleus	12.84	18.58
OQU86460	Sorghum	nucleus	18.96	18.56
Bra019710.1-P	Field mustard	nucleus	19.27	18.42
AT1G66650.1	Thale cress	nucleus	18.35	18.24
Solyc03g034450.2.1	Tomato	nucleus	21.71	18.11
Solyc03g042520.1.1	Tomato	nucleus	17.13	18.06
CDX96140	Canola	cytosol, nucleus, plastid	19.27	18.05
EER97677	Sorghum	cytosol	16.51	17.88
Bra004174.1-P	Field mustard	nucleus	19.27	17.85
EER92255	Sorghum	nucleus	16.21	17.55
Bra004176.1-P	Field mustard	nucleus	18.04	17.51
CDX96138	Canola	nucleus	18.04	17.35
OQU86439	Sorghum	cytosol, mitochondrion, plastid	14.07	17.29
OQU84285	Sorghum	cytosol	16.21	17.04
EES02178	Sorghum	cytosol, nucleus, peroxisome	15.9	16.94
CDY36211	Canola	nucleus	18.65	16.9
OQU86434	Sorghum	endoplasmic reticulum, plasma membrane	16.82	16.87
AT1G66610.1	Thale cress	nucleus	18.65	16.67
EES02573	Sorghum	cytosol	17.74	16.62
EES06707	Sorghum	nucleus	17.13	16.28
KXG32019	Sorghum	nucleus, plastid	18.04	15.86
CDY01757	Canola	cytosol	2.45	15.09
EES19270	Sorghum	cytosol, nucleus, peroxisome	15.9	14.73
EES02574	Sorghum	nucleus	18.96	13.84
KXG30435	Sorghum	cytosol	3.36	10.78
KXG22272	Sorghum	cytosol	3.36	10.78
KXG19745	Sorghum	extracellular	3.06	10.42
CDY01758	Canola	cytosol	12.54	9.38

Protein Annotations

Gene3D:3.30.40.10	MapMan:35.1	InterPro:7-in-absentia-prot_TRAF-dom	EntrezGene:8075990	UniProt:C5Z065	EnsemblPlants:EES17728
ProteinID:EES17728	ProteinID:EES17728.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006464	GO:GO:0006511
GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0008270	GO:GO:0009056	GO:GO:0009987
GO:GO:0016567	GO:GO:0016740	GO:GO:0019538	GO:GO:0046872	GO:GO:0061630	InterPro:IPR008974
InterPro:IPR013010	InterPro:IPR013083	PFAM:PF03145	PFscan:PS51081	PANTHER:PTHR10315	PANTHER:PTHR10315:SF35
InterPro:SINA-like	EnsemblPlantsGene:SORBI_3009G047000	SUPFAM:SSF49599	unigene:Sbi.19694	InterPro:TRAF-like	UniParc:UPI0001A887C9
RefSeq:XP_002439298.1	InterPro:Znf_RING/FYVE/PHD	InterPro:Znf_SIAH	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr9:+:4448447..4451407

Molecular Weight (calculated)

35671.3 Da

IEP (calculated)

6.704

GRAVY (calculated)

-0.289

Length

327 amino acids

Sequence
(BLAST)

001: MRLKRQKLPF PSSGCAGGAH NKEKEKEMEK EKEKGSSGPL PAGAAAAVGY MSVEDADALD CGACYHPLKP PIFQCNEGHV VCSSCRDKLV PAGKCHVCGT
101: ATSNYHRCHA MERLVDSIRV PCPNAAYGCN TRPAYYDHHG HCKTCPYAPY HCPSKECSFF GSTDALLDHL TGAHGWPSPT NISVFEMHSI CLYDGFNFLL
201: ADCAEDDNHG NTTTTISSNK YLFLLNVTRQ SLGRAISVHL IGQGSPSEIL RCVLSCSLVV YDRCERHKFL ASHSLESEIN VECMDLPNGP TDPADCSHFV
301: VPHSVLGDKN KEDPIQVNVC ISIINLQ

Best Arabidopsis Sequence Match ( AT5G37870.1 )
(BLAST)

001: MVGVLLSERN GSQKRHCSSI SSDDGRKRVD KTRSAMLTDL DILDCPICYQ ALKIPVFQCG NGHLACSSCC PKLRNKCPAC ALPVGHIRCR AMERVLESVL
101: VPCRYADLGC TKTIYYGRES THEKICNFSP CSCPVQGCNY TGSYKDLYEH YDLTHSTGST AYSFNGVSYI AAMMFISDKI LIERVYEKKL LFVVQCFEEP
201: CGVYVSVSCI APSAPEVGEF SYGLLYTTWE GVTMTYQSPK VKKVLKVSSQ RPKDSFMLIP HSLLCGPLLG MMLCINELKQ M

Arabidopsis Description

Putative E3 ubiquitin-protein ligase SINA-like 6 [Source:UniProtKB/Swiss-Prot;Acc:Q9FKD9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.