CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, plastid
BaCelLo:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG22272	Sorghum	cytosol	100.0	100.0
KXG19745	Sorghum	extracellular	71.57	76.04
GSMUA_AchrUn_...	Banana	cytosol, extracellular, nucleus	14.71	22.73
EER92255	Sorghum	nucleus	62.75	21.19
EER97677	Sorghum	cytosol	60.78	20.53
EES02178	Sorghum	cytosol, nucleus, peroxisome	55.88	18.57
EES06707	Sorghum	nucleus	54.9	16.28
OQU84285	Sorghum	cytosol	49.02	16.08
EES19270	Sorghum	cytosol, nucleus, peroxisome	54.9	15.86
OQU86453	Sorghum	cytosol	9.8	4.67
OQU86439	Sorghum	cytosol, mitochondrion, plastid	11.76	4.51
KXG32008	Sorghum	cytosol, nucleus, plastid	10.78	4.14
KXG32011	Sorghum	cytosol	9.8	4.12
KXG32014	Sorghum	nucleus	8.82	4.09
KXG37941	Sorghum	cytosol	10.78	3.93
KXG32010	Sorghum	extracellular	8.82	3.67
KXG32028	Sorghum	plastid	11.76	3.57
KXG32019	Sorghum	nucleus, plastid	12.75	3.49
EES02573	Sorghum	cytosol	11.76	3.44
KXG37942	Sorghum	cytosol, nucleus, plastid	8.82	3.38
KXG32009	Sorghum	nucleus	9.8	3.38
OQU78944	Sorghum	nucleus	10.78	3.37
EES17728	Sorghum	cytosol, mitochondrion, nucleus	10.78	3.36
OQU86460	Sorghum	nucleus	10.78	3.29
KXG21322	Sorghum	nucleus	11.76	3.21
EES02574	Sorghum	nucleus	13.73	3.12
OQU77414	Sorghum	mitochondrion, nucleus	10.78	3.11
OQU86434	Sorghum	endoplasmic reticulum, plasma membrane	9.8	3.07
OQU77425	Sorghum	nucleus	10.78	2.93
OQU77422	Sorghum	cytosol	7.84	2.8
EES00387	Sorghum	nucleus	7.84	2.51
EES17735	Sorghum	mitochondrion	10.78	2.45
EES17731	Sorghum	nucleus	6.86	2.02
KXG32085	Sorghum	nucleus	3.92	1.77

Protein Annotations

Gene3D:2.60.210.10	MapMan:35.1	InterPro:7-in-absentia-prot_TRAF-dom	UniProt:A0A194YRH7	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006464
GO:GO:0006511	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009987
GO:GO:0016567	GO:GO:0019538	GO:GO:0046872	InterPro:IPR008974	ProteinID:KXG22272.1	EnsemblPlants:KXG30435
ProteinID:KXG30435	ProteinID:KXG30435.1	PFAM:PF03145	PANTHER:PTHR10315	PANTHER:PTHR10315:SF37	InterPro:SINA-like
EnsemblPlantsGene:SORBI_3004G180800	SUPFAM:SSF49599	InterPro:TRAF-like	UniParc:UPI0007F2AF4B	:	:

Description

hypothetical protein

Coordinates

chr4:+:53323012..53324437

Molecular Weight (calculated)

12051.7 Da

IEP (calculated)

9.963

GRAVY (calculated)

-0.320

Length

102 amino acids

Sequence
(BLAST)

001: MKMLTMVHTC WTKLGADHDT HLKHCSHLKQ CFGQYYIAFL SFMRDDIELK NYSYSLKVWG TRRKMIGQGV PRSMSDSHWK VRNSYDGIII QRNMALFFVG
101: GW

Best Arabidopsis Sequence Match ( AT3G61790.1 )
(BLAST)

001: MDLDSMDCTS TMDVTDDEEI HQDRHSYASV SKHHHTNNNT TNVNAAASGL LPTTTSVHEL LECPVCTNSM YPPIHQCHNG HTLCSTCKAR VHNRCPTCRQ
101: ELGDIRCLAL EKVAESLELP CKHMSLGCPE IFPYYSKLKH ETVCNFRPYS CPYAGSECSV TGDIPFLVAH LRDDHKVDMH SGCTFNHRYV KSNPREVENA
201: TWMLTVFHCF GQYFCLHFEA FQLGMAPVYM AFLRFMGDET EARNYNYSLE VGGYGRKLIW EGTPRSVRDS HRKVRDSHDG LIIQRNMALF FSGGDRKELK
301: LRVTGRIWKE QQQSGEGGGA CIPNLS

Arabidopsis Description

SINAT3E3 ubiquitin-protein ligase [Source:UniProtKB/TrEMBL;Acc:A0A178V9V8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.