Subcellular Localization
min:
: max
Winner_takes_all: extracellular, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- extracellular 3
- endoplasmic reticulum 2
- vacuole 2
- plasma membrane 2
- golgi 2
- mitochondrion 2
- cytosol 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr7P14550_001 | Banana | cytosol, plastid, vacuole | 48.48 | 36.78 |
| KXG19745 | Sorghum | extracellular | 28.79 | 19.79 |
| GSMUA_Achr1P10820_001 | Banana | nucleus, peroxisome, plasma membrane | 69.7 | 19.01 |
| GSMUA_Achr10P... | Banana | cytosol, nucleus, plastid | 72.73 | 18.75 |
| GSMUA_Achr11P... | Banana | nucleus | 69.7 | 15.44 |
| KXG22272 | Sorghum | cytosol | 22.73 | 14.71 |
| KXG30435 | Sorghum | cytosol | 22.73 | 14.71 |
| GSMUA_Achr2P09260_001 | Banana | nucleus | 69.7 | 14.7 |
| GSMUA_Achr6P22600_001 | Banana | cytosol | 69.7 | 14.7 |
| GSMUA_Achr3P08700_001 | Banana | cytosol | 75.76 | 14.49 |
| GSMUA_Achr9P05880_001 | Banana | nucleus | 68.18 | 14.47 |
| GSMUA_Achr3P16360_001 | Banana | cytosol | 68.18 | 14.33 |
| GSMUA_Achr5P06970_001 | Banana | cytosol | 69.7 | 14.2 |
| GSMUA_Achr1P13770_001 | Banana | cytosol | 66.67 | 14.1 |
| GSMUA_Achr10P... | Banana | cytosol, nucleus, plastid | 57.58 | 10.92 |
| GSMUA_Achr3P15050_001 | Banana | nucleus | 51.52 | 10.66 |
Protein Annotations
| MapMan:35.1 | InterPro:7-in-absentia-prot_TRAF-dom | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006464 | GO:GO:0006511 | GO:GO:0007275 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009056 | GO:GO:0009987 | GO:GO:0016020 | GO:GO:0016021 | GO:GO:0016567 |
| GO:GO:0019538 | GO:GO:0046872 | EnsemblPlantsGene:GSMUA_AchrUn_randomG13340_001 | EnsemblPlants:GSMUA_AchrUn_randomP13340_001 | EnsemblPlants:GSMUA_AchrUn_randomT13340_001 | UniProt:M0U8U3 |
| PFAM:PF03145 | PANTHER:PTHR10315 | PANTHER:PTHR10315:SF37 | InterPro:SINA-like | TMHMM:TMhelix | UniParc:UPI0002954D2C |
Description
E3 ubiquitin-protein ligase SINAT5 [Source:GMGC_GENE;Acc:GSMUA_AchrUn_randomG13340_001]
Coordinates
chrchrUn_random:-:64112373..64116798
Molecular Weight (calculated)
7630.2 Da
IEP (calculated)
5.533
GRAVY (calculated)
0.133
Length
66 amino acids
Sequence
(BLAST)
(BLAST)
1: MHIGGSFNYR FIKSKPYEVE NATWMLMVFS CFGQYFCLHF VAFQLGMTLG YDDEAKCYSY SLEVGG
001: MDILYVQPVN QECIIALEKV AESLELPCKY YNLGCLGIFP YYSKLKHESQ CNFRPYSCPY AGSECAAVGD ITFLVAHLRD DHKVDMHTGC TFNHRYVKSN
101: PREVENATWM LTVFQCFGQY FCLHFEAFQL GMAPVYMAFL RFMGDEDDAR NYTYSLEVGG SGRKQTWEGT PRSVRDSHRK VRDSHDGLII QRNMALFFSG
201: GDKKELKLRV TGRIWKEQQN PDSGVCITSM CSS
101: PREVENATWM LTVFQCFGQY FCLHFEAFQL GMAPVYMAFL RFMGDEDDAR NYTYSLEVGG SGRKQTWEGT PRSVRDSHRK VRDSHDGLII QRNMALFFSG
201: GDKKELKLRV TGRIWKEQQN PDSGVCITSM CSS
Arabidopsis Description
TRAF-like superfamily protein [Source:TAIR;Acc:AT5G53360]
SUBAcon: [plasma membrane]
SUBAcon: [plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.