Subcellular Localization
min:
: max
Winner_takes_all: plastid, nucleus
Predictor Summary:
Predictor Summary:
- plastid 4
- mitochondrion 1
- nucleus 3
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| TraesCS1A01G190800.1 | |
| TraesCS1B01G206000.1 | |
| TraesCS1D01G194800.2 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G37890.1 | TraesCS1A01G190800.1 | AT5G65940.1 | 21798944 |
| AT5G37890.1 | TraesCS1B01G206000.1 | AT5G65940.1 | 21798944 |
| AT5G37890.1 | TraesCS1D01G194800.2 | AT5G65940.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2B01G594500.1 | Wheat | nucleus, plastid | 98.12 | 97.6 |
| TraesCS2D01G564800.1 | Wheat | nucleus, plastid | 97.59 | 97.07 |
| HORVU2Hr1G118840.1 | Barley | plastid | 92.76 | 93.26 |
| TraesCS2A01G586400.1 | Wheat | nucleus | 52.55 | 53.7 |
| Os01t0123800-00 | Rice | nucleus | 35.39 | 34.2 |
| EES02574 | Sorghum | nucleus | 38.34 | 31.92 |
| TraesCS3A01G048300.1 | Wheat | nucleus | 20.38 | 27.74 |
| Solyc03g036460.1.1 | Tomato | cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole | 15.01 | 25.34 |
| CDY11709 | Canola | nucleus | 10.99 | 24.85 |
| AT5G37910.1 | Thale cress | nucleus | 17.96 | 24.28 |
| TraesCS3A01G031100.1 | Wheat | cytosol | 17.43 | 24.16 |
| CDX99687 | Canola | nucleus | 18.23 | 24.03 |
| CDY52473 | Canola | nucleus | 18.23 | 23.94 |
| Bra025434.1-P | Field mustard | nucleus | 18.23 | 23.94 |
| PGSC0003DMT400043047 | Potato | cytosol | 11.8 | 23.91 |
| AT5G37870.1 | Thale cress | nucleus | 17.96 | 23.84 |
| KRH42263 | Soybean | nucleus | 20.38 | 23.75 |
| KRH58384 | Soybean | nucleus | 20.11 | 23.44 |
| TraesCS3A01G030600.1 | Wheat | nucleus | 17.69 | 23.4 |
| TraesCS3A01G030100.1 | Wheat | nucleus | 18.5 | 23.23 |
| TraesCS3A01G062800.1 | Wheat | nucleus | 17.96 | 23.1 |
| CDY01699 | Canola | nucleus, plastid | 17.43 | 23.05 |
| Bra000425.1-P | Field mustard | nucleus | 17.43 | 22.97 |
| TraesCS3A01G030800.1 | Wheat | cytosol | 16.62 | 22.55 |
| Bra018266.1-P | Field mustard | plastid | 17.43 | 22.49 |
| CDY10787 | Canola | plastid | 17.43 | 22.49 |
| CDY12498 | Canola | nucleus | 16.35 | 22.43 |
| AT5G37900.1 | Thale cress | nucleus | 14.48 | 22.41 |
| TraesCS2A01G446400.1 | Wheat | cytosol, nucleus, plastid | 16.09 | 22.3 |
| CDY25763 | Canola | nucleus | 16.09 | 22.06 |
| TraesCS3A01G062700.1 | Wheat | nucleus | 16.09 | 21.82 |
| CDX83363 | Canola | cytosol, nucleus, plasma membrane | 10.46 | 21.79 |
| AT1G66630.1 | Thale cress | cytosol | 17.69 | 21.78 |
| TraesCS3A01G031300.1 | Wheat | cytosol | 16.35 | 21.71 |
| Bra012354.1-P | Field mustard | cytosol | 15.82 | 21.69 |
| CDY01695 | Canola | nucleus | 17.96 | 21.68 |
| AT5G37890.1 | Thale cress | nucleus | 16.62 | 21.68 |
| TraesCS3A01G031200.1 | Wheat | cytosol | 15.55 | 21.64 |
| VIT_14s0006g01870.t01 | Wine grape | cytosol | 11.26 | 21.0 |
| AT1G66650.1 | Thale cress | nucleus | 18.5 | 20.97 |
| Solyc03g034460.2.1 | Tomato | nucleus | 20.11 | 20.83 |
| Bra022858.1-P | Field mustard | nucleus | 16.89 | 20.72 |
| CDY47873 | Canola | nucleus | 17.96 | 20.68 |
| Bra028395.1-P | Field mustard | nucleus | 17.96 | 20.68 |
| CDY27008 | Canola | nucleus | 18.23 | 20.67 |
| TraesCS5A01G228300.1 | Wheat | cytosol | 17.43 | 20.63 |
| CDY01756 | Canola | cytosol, nucleus, plastid | 16.35 | 20.54 |
| TraesCS1A01G060800.1 | Wheat | nucleus | 16.89 | 20.52 |
| Bra004401.1-P | Field mustard | cytosol, mitochondrion, nucleus | 14.75 | 20.45 |
| Solyc03g034450.2.1 | Tomato | nucleus | 21.45 | 20.41 |
| TraesCS3A01G025200.1 | Wheat | cytosol, nucleus, plastid | 14.75 | 20.07 |
| CDX95911 | Canola | cytosol, nucleus, plastid | 15.82 | 20.07 |
| CDY70665 | Canola | nucleus | 17.43 | 20.06 |
| PGSC0003DMT400043050 | Potato | nucleus | 20.38 | 19.95 |
| AT1G66620.1 | Thale cress | nucleus | 16.62 | 19.81 |
| TraesCS5A01G531400.2 | Wheat | nucleus | 17.43 | 19.64 |
| Solyc03g042550.1.1 | Tomato | nucleus | 18.77 | 19.44 |
| TraesCS3A01G101600.1 | Wheat | nucleus | 9.12 | 19.21 |
| TraesCS3A01G101400.1 | Wheat | cytosol | 10.72 | 19.14 |
| Bra019710.1-P | Field mustard | nucleus | 17.43 | 19.01 |
| CDY36209 | Canola | plastid | 10.72 | 18.96 |
| AT5G37930.1 | Thale cress | nucleus | 17.69 | 18.91 |
| AT1G66610.1 | Thale cress | nucleus | 18.5 | 18.85 |
| Solyc03g042520.1.1 | Tomato | nucleus | 15.55 | 18.71 |
| Bra004402.1-P | Field mustard | nucleus | 15.82 | 18.61 |
| TraesCS3A01G032200.1 | Wheat | nucleus | 16.89 | 18.53 |
| CDX96138 | Canola | nucleus | 16.89 | 18.53 |
| TraesCS3A01G027500.1 | Wheat | plastid | 13.4 | 18.12 |
| Bra004176.1-P | Field mustard | nucleus | 16.35 | 18.1 |
| TraesCS3A01G027900.1 | Wheat | cytosol | 13.14 | 18.01 |
| TraesCS4A01G395500.1 | Wheat | cytosol | 13.4 | 17.92 |
| TraesCS1A01G070000.1 | Wheat | plastid | 11.53 | 17.7 |
| CDX96140 | Canola | cytosol, nucleus, plastid | 16.35 | 17.48 |
| TraesCS6A01G086800.1 | Wheat | nucleus | 14.48 | 17.36 |
| TraesCS4A01G148400.2 | Wheat | nucleus | 13.94 | 17.28 |
| CDY36211 | Canola | nucleus | 16.62 | 17.17 |
| Bra004174.1-P | Field mustard | nucleus | 16.09 | 17.0 |
| TraesCS3A01G158000.1 | Wheat | cytosol, nucleus, plasma membrane | 14.21 | 16.99 |
| AT5G62800.1 | Thale cress | nucleus | 15.82 | 16.95 |
| TraesCS7A01G332700.1 | Wheat | cytosol, nucleus, peroxisome | 15.28 | 16.72 |
| AT1G66660.2 | Thale cress | nucleus | 15.55 | 16.67 |
| TraesCS4A01G395600.1 | Wheat | cytosol | 11.53 | 16.6 |
| TraesCS2A01G129000.1 | Wheat | plasma membrane | 13.94 | 16.3 |
| TraesCS4A01G369000.1 | Wheat | cytosol | 8.04 | 16.13 |
| TraesCS1A01G136400.2 | Wheat | cytoskeleton, nucleus, peroxisome | 14.75 | 15.85 |
| TraesCS3A01G032100.1 | Wheat | nucleus | 16.89 | 13.82 |
| TraesCS1A01G371400.1 | Wheat | cytosol | 7.24 | 13.5 |
| CDY01757 | Canola | cytosol | 1.34 | 9.43 |
| CDY01758 | Canola | cytosol | 9.65 | 8.24 |
Protein Annotations
| Gene3D:3.30.40.10 | MapMan:35.1 | InterPro:7-in-absentia-prot_TRAF-dom | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006511 | GO:GO:0007275 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008270 | GO:GO:0009056 | GO:GO:0009987 | GO:GO:0019538 |
| InterPro:IPR008974 | InterPro:IPR013010 | InterPro:IPR013083 | PFAM:PF03145 | PFscan:PS51081 | PANTHER:PTHR10315 |
| PANTHER:PTHR10315:SF44 | InterPro:SINA-like | SUPFAM:SSF49599 | InterPro:TRAF-like | EnsemblPlantsGene:TraesCS2A01G589200 | EnsemblPlants:TraesCS2A01G589200.1 |
| InterPro:Znf_RING/FYVE/PHD | InterPro:Znf_SIAH | SEG:seg | : | : | : |
Description
No Description!
Coordinates
chr2A:+:778019850..778021071
Molecular Weight (calculated)
41989.1 Da
IEP (calculated)
8.441
GRAVY (calculated)
-0.683
Length
373 amino acids
Sequence
(BLAST)
(BLAST)
001: MSGSAAKRVG TPLADAEGSP KRPRSSRHPS LSPSPSQARS QAPSPSQSRS RSRSRSRLLL ARTSPPPYIG SPSYAPYDDR SPSRSYSRSR RRSRSRVSEE
101: TDGNGRPVWR PHSYREHSGE HGDGEYSVRI GDYDRLFICR SCHRMLSTPV YECPDGHVTC SRCRDNIGDN RCNYCAANGC VRSRAVEEFL GRISFSCRNQ
201: QYGCEVFLLH HEMRAHERTC HYDPCFCPVH RCGFAGPAYD LESHLATIHR WEVINFRYGE SFQAPAFDSA IFRCEDYGEL FHISSSREGL GTALSMICIR
301: PDNAFEEEFT YELKMPAGGR RHRLQIQSTV WNTSLRYGIG EGSDVFLLVP DKLPGVENGC AVEVCIRKVV SGN
101: TDGNGRPVWR PHSYREHSGE HGDGEYSVRI GDYDRLFICR SCHRMLSTPV YECPDGHVTC SRCRDNIGDN RCNYCAANGC VRSRAVEEFL GRISFSCRNQ
201: QYGCEVFLLH HEMRAHERTC HYDPCFCPVH RCGFAGPAYD LESHLATIHR WEVINFRYGE SFQAPAFDSA IFRCEDYGEL FHISSSREGL GTALSMICIR
301: PDNAFEEEFT YELKMPAGGR RHRLQIQSTV WNTSLRYGIG EGSDVFLLVP DKLPGVENGC AVEVCIRKVV SGN
001: MSGEASTSRR KRQRVPSSVE SVENGGGDAV ARSGTLFELD LLDCPICCHA LTSPIFQCDN GHIACSSCCT KLRNKCPSCA LPIGNFRSRI MERVVEAVMV
101: TCPNVKHGCT EKFSYGKELI HEKDCRFALC YCPAPNCNYS GVYKDLYSHF YVNHYDTWNQ IGCGNFAGAW LRISEKILVL QYGQGPLIAV QCFKETQGMY
201: VTVNCIAPCA PGVGELSFEL SYKMPMGGNS TMMFKSEEMN RIQKVSFQTP EKDFMLVPYY FLGDFSTLKM EICIRKLKKD EEEADEDEES EEEEDDDDDD
301: DDDDEEEDAD EEE
101: TCPNVKHGCT EKFSYGKELI HEKDCRFALC YCPAPNCNYS GVYKDLYSHF YVNHYDTWNQ IGCGNFAGAW LRISEKILVL QYGQGPLIAV QCFKETQGMY
201: VTVNCIAPCA PGVGELSFEL SYKMPMGGNS TMMFKSEEMN RIQKVSFQTP EKDFMLVPYY FLGDFSTLKM EICIRKLKKD EEEADEDEES EEEEDDDDDD
301: DDDDEEEDAD EEE
Arabidopsis Description
E3 ubiquitin-protein ligase SINA-like 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9C6H3]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.