Factsheet for TraesCS3D01G165600.1

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, cytoskeleton, nucleus

Predictor Summary:

nucleus 1
mitochondrion 1
cytoskeleton 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytoskeleton, nucleus, plasma membrane
Any Predictor:	cytoskeleton, nucleus, plasma membrane
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytoskeleton
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3B01G185000.1	Wheat	cytoskeleton, nucleus, plasma membrane	99.08	98.47
TraesCS3A01G158000.1	Wheat	cytosol, nucleus, plasma membrane	93.85	97.76
HORVU3Hr1G032110.2	Barley	cytoskeleton, nucleus, plasma membrane	97.54	96.94
TraesCS1D01G134000.1	Wheat	mitochondrion, nucleus, peroxisome, plasma membrane	71.08	91.67
EES02178	Sorghum	cytosol, nucleus, peroxisome	84.62	89.58
Os01t0234900-01	Rice	cytoskeleton, nucleus, peroxisome	89.23	83.57
TraesCS7D01G340900.1	Wheat	cytosol, nucleus, peroxisome	81.85	78.01
TraesCS4D01G164700.1	Wheat	nucleus	65.85	71.1
TraesCS2D01G131700.1	Wheat	cytosol	64.92	70.1
TraesCS3D01G028800.1	Wheat	nucleus	15.69	23.83
TraesCS3D01G029000.1	Wheat	cytosol	19.08	21.99
TraesCS3D01G504900.1	Wheat	nucleus	18.46	21.9
TraesCS3D01G015600.1	Wheat	cytosol	20.0	21.89
TraesCS3D01G020800.1	Wheat	cytosol, nucleus, plastid	17.85	21.01
TraesCS3D01G018100.1	Wheat	cytosol	17.23	20.9
TraesCS3D01G030300.1	Wheat	nucleus	18.77	20.4
TraesCS3D01G031300.1	Wheat	nucleus	16.92	20.07
TraesCS3D01G029300.1	Wheat	nucleus	19.38	18.53
TraesCS3D01G029600.1	Wheat	nucleus	19.08	18.51
TraesCS3D01G018300.1	Wheat	mitochondrion	18.15	18.27
TraesCS5D01G504400.1	Wheat	cytosol	10.77	17.41
TraesCS4D01G356400.2	Wheat	nucleus	17.85	17.26
TraesCS1D01G061700.1	Wheat	nucleus	18.46	17.05
TraesCS2D01G600200.1	Wheat	nucleus	16.62	14.79
TraesCS1D01G102900.1	Wheat	nucleus	16.62	14.14
TraesCS2D01G564800.1	Wheat	nucleus, plastid	16.31	14.13
TraesCS3D01G029700.1	Wheat	cytosol, mitochondrion, nucleus	11.69	13.33
TraesCS3D01G029400.1	Wheat	nucleus	18.77	13.29

Protein Annotations

MapMan:19.2.2.1.5.3.5	Gene3D:2.60.210.10	Gene3D:3.30.40.10	InterPro:7-in-absentia-prot_TRAF-dom	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006511
GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0008270	GO:GO:0009056	GO:GO:0009987
GO:GO:0019538	InterPro:IPR001841	InterPro:IPR008974	InterPro:IPR013010	InterPro:IPR013083	PFAM:PF03145
PFscan:PS50089	PFscan:PS51081	PANTHER:PTHR10315	PANTHER:PTHR10315:SF73	InterPro:SINA-like	SUPFAM:SSF49599
SUPFAM:SSF57850	InterPro:TRAF-like	EnsemblPlantsGene:TraesCS3D01G165600	EnsemblPlants:TraesCS3D01G165600.1	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD
InterPro:Znf_SIAH	TIGR:cd03829	TIGR:cd16571	SEG:seg	:	:

Description

No Description!

Coordinates

chr3D:-:137485407..137488062

Molecular Weight (calculated)

36172.3 Da

IEP (calculated)

7.003

GRAVY (calculated)

-0.262

Length

325 amino acids

Sequence
(BLAST)

001: MDVDSVECLS LPDAAMDADD VGLALHPHGG ILAAASRPAA YPKAGAGAGG IVAPGSSVHE LLECPVCTNS MYPPIHQCQN GHTLCSTCKA RVHNRCPTCR
101: QELGDIRCLA LEKVAESLEL PCKYYSLGCP EIFPYYSKIK HEAMCSFRPY SCPYAGSECS VTGDIPYLVN HLRDDHKVDM HSGCTFNHRY VKSNPREVEN
201: ATWMLTVFHC FGQYFCLHFE AFQLGMAPVY MAFLRFMGDE NEARNYSYSL EVGANGRKMV WEGTPRSVRD SHRKVRDSHD GLLIQRNMAL FFSGGDRKEL
301: KLRITGRIWK ETQTPDGTCV PVLCS

Best Arabidopsis Sequence Match ( AT3G61790.1 )
(BLAST)

001: MDLDSMDCTS TMDVTDDEEI HQDRHSYASV SKHHHTNNNT TNVNAAASGL LPTTTSVHEL LECPVCTNSM YPPIHQCHNG HTLCSTCKAR VHNRCPTCRQ
101: ELGDIRCLAL EKVAESLELP CKHMSLGCPE IFPYYSKLKH ETVCNFRPYS CPYAGSECSV TGDIPFLVAH LRDDHKVDMH SGCTFNHRYV KSNPREVENA
201: TWMLTVFHCF GQYFCLHFEA FQLGMAPVYM AFLRFMGDET EARNYNYSLE VGGYGRKLIW EGTPRSVRDS HRKVRDSHDG LIIQRNMALF FSGGDRKELK
301: LRVTGRIWKE QQQSGEGGGA CIPNLS

Arabidopsis Description

SINAT3E3 ubiquitin-protein ligase [Source:UniProtKB/TrEMBL;Acc:A0A178V9V8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.