Factsheet for HORVU6Hr1G016120.2

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 2
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	mitochondrion, nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCSU01G019700.1	Wheat	nucleus	99.04	99.04
TraesCS6B01G114800.1	Wheat	nucleus	99.04	99.04
TraesCS6A01G086800.1	Wheat	nucleus	98.71	98.71
Os02t0128800-01	Rice	cytosol	90.68	91.56
OQU84285	Sorghum	cytosol	89.07	89.07
Zm00001d015123_P001	Maize	cytosol	88.42	87.86
GSMUA_Achr1P10820_001	Banana	nucleus, peroxisome, plasma membrane	64.63	83.06
GSMUA_Achr11P...	Banana	nucleus	72.35	75.5
HORVU7Hr1G082100.1	Barley	nucleus	65.27	70.73
HORVU3Hr1G032110.2	Barley	cytoskeleton, nucleus, plasma membrane	65.27	62.08
HORVU1Hr1G033130.2	Barley	plastid	66.56	51.36
HORVU2Hr1G022590.1	Barley	nucleus	61.41	50.4
HORVU3Hr1G005260.1	Barley	cytosol	11.9	40.66
HORVU4Hr1G056260.1	Barley	nucleus	20.9	23.64
HORVU7Hr1G021160.2	Barley	cytosol	20.26	22.11
HORVU3Hr1G005320.1	Barley	nucleus	18.65	21.89
HORVU3Hr1G004860.1	Barley	cytosol	17.04	21.03
HORVU3Hr1G004950.1	Barley	nucleus	19.61	20.33
HORVU3Hr1G018640.1	Barley	cytosol	13.5	20.19
HORVU3Hr1G018420.2	Barley	plastid	19.94	19.56
HORVU2Hr1G118560.2	Barley	nucleus	17.36	19.29
HORVU3Hr1G004890.1	Barley	nucleus	18.33	19.0
HORVU1Hr1G012490.3	Barley	nucleus	19.94	18.67
HORVU0Hr1G006120.2	Barley	cytosol, nucleus, plastid	16.72	18.57
HORVU3Hr1G004880.2	Barley	nucleus	19.94	18.29
HORVU4Hr1G087120.3	Barley	nucleus	20.58	17.88
HORVU3Hr1G005270.1	Barley	nucleus	17.04	15.54
HORVU0Hr1G006130.1	Barley	nucleus	15.43	14.55
HORVU2Hr1G118840.1	Barley	plastid	17.04	14.29

Protein Annotations

MapMan:19.2.2.1.5.3.5	Gene3D:2.60.210.10	Gene3D:3.30.40.10	InterPro:7-in-absentia-prot_TRAF-dom	EMBL:AK364229	UniProt:F2DK11
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006464	GO:GO:0006511	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152
GO:GO:0008270	GO:GO:0009056	GO:GO:0009987	GO:GO:0016567	GO:GO:0019538	GO:GO:0046872
EnsemblPlantsGene:HORVU6Hr1G016120	EnsemblPlants:HORVU6Hr1G016120.2	InterPro:IPR001841	InterPro:IPR008974	InterPro:IPR013010	InterPro:IPR013083
PFAM:PF03145	PFscan:PS50089	PFscan:PS51081	PANTHER:PTHR10315	PANTHER:PTHR10315:SF42	InterPro:SINA-like
SUPFAM:SSF49599	SUPFAM:SSF57850	InterPro:TRAF-like	UniParc:UPI000200677D	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD
InterPro:Znf_SIAH	:	:	:	:	:

Description

E3 ubiquitin-protein ligase [Source:UniProtKB/TrEMBL;Acc:F2DK11]

Coordinates

chrchr6H:-:36030853..36034928

Molecular Weight (calculated)

34831.8 Da

IEP (calculated)

7.410

GRAVY (calculated)

-0.282

Length

311 amino acids

Sequence
(BLAST)

001: MAPGSSIVSV TEVPESDCGD RGLSESLSST RLDGDSTSKP SWAASLVNVG LSSLTGLNDL LECPVCTNSM RPPILQCPNG HTICSSCKHR VDNHCPTCRQ
101: ELGNIRCLAL EKVAESIQLP CKYQSLGCTE IHPYQNKLKH EEICRFRPYS CPYAGSECLI AGDVPMLVSH LINDHKVDLH EGCTFNHRYV KSNPYEVENA
201: TWMLTVFKCF GQHFCLHFEA FLLGMSPVYM AFLRFMGEES EARGFCYSLE VGGNGRKLTW QGTPRSIRDG HKKVRDSFDG LIIHRNMALF FSSGTRQELK
301: LRVTGRIWKE Q

Best Arabidopsis Sequence Match ( AT2G41980.1 )
(BLAST)

001: MAPGGSALKE ALESNSTGVD YEVKMAKVEA NSKPTKSGSG SIGKFHSSNG VYELLECPVC TNLMYPPIHQ CPNGHTLCSS CKLRVQNTCP TCRYELGNIR
101: CLALEKVAES LEVPCRYQNL GCQDIFPYYS KLKHEQHCRF RSYSCPYAGS ECSVTGDIPT LVDHLKDDHK VDMHDGCTFN HRYVKSNPHE VENATWMLTV
201: FNCFGRQFCL HFEAFQLGMA PVYMAFLRFM GDENEAKKFS YSLEVGAHSR KLTWQGIPRS IRDSHRKVRD SQDGLIIPRN LALYFSGSDK EELKLRVTGR
301: IWKEE

Arabidopsis Description

SINAT1E3 ubiquitin-protein ligase [Source:UniProtKB/TrEMBL;Acc:A0A178VZ75]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.