Factsheet for HORVU3Hr1G018420.2

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 4
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	nucleus, plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	nucleus
TargetP:	plastid
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3A01G101600.1	Wheat	nucleus	41.96	75.14
TraesCS3A01G101400.1	Wheat	cytosol	48.58	73.68
HORVU3Hr1G018640.1	Barley	cytosol	38.8	59.13
HORVU7Hr1G021160.2	Barley	cytosol	38.49	42.81
Zm00001d040046_P001	Maize	cytosol, mitochondrion, nucleus	29.02	41.07
OQU86439	Sorghum	cytosol, mitochondrion, plastid	32.18	38.35
HORVU3Hr1G005260.1	Barley	cytosol	8.2	28.57
HORVU3Hr1G004860.1	Barley	cytosol	17.67	22.22
HORVU4Hr1G056260.1	Barley	nucleus	18.93	21.82
HORVU3Hr1G005320.1	Barley	nucleus	17.35	20.75
HORVU4Hr1G087120.3	Barley	nucleus	23.34	20.67
HORVU6Hr1G016120.2	Barley	nucleus	19.56	19.94
HORVU3Hr1G004890.1	Barley	nucleus	18.61	19.67
HORVU3Hr1G004950.1	Barley	nucleus	18.61	19.67
HORVU7Hr1G082100.1	Barley	nucleus	17.67	19.51
HORVU3Hr1G005270.1	Barley	nucleus	19.87	18.48
HORVU1Hr1G012490.3	Barley	nucleus	19.24	18.37
HORVU3Hr1G004880.2	Barley	nucleus	18.93	17.7
HORVU2Hr1G118560.2	Barley	nucleus	15.46	17.5
HORVU3Hr1G032110.2	Barley	cytoskeleton, nucleus, plasma membrane	17.98	17.43
HORVU0Hr1G006120.2	Barley	cytosol, nucleus, plastid	14.2	16.07
HORVU2Hr1G022590.1	Barley	nucleus	18.61	15.57
HORVU1Hr1G033130.2	Barley	plastid	18.61	14.64
HORVU2Hr1G118840.1	Barley	plastid	17.03	14.56
HORVU0Hr1G006130.1	Barley	nucleus	13.88	13.33

Protein Annotations

Gene3D:3.30.40.10	MapMan:35.1	InterPro:7-in-absentia-prot_TRAF-dom	UniProt:A0A287KB74	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006464
GO:GO:0006511	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0008270	GO:GO:0009056
GO:GO:0009987	GO:GO:0016567	GO:GO:0019538	GO:GO:0046872	EnsemblPlantsGene:HORVU3Hr1G018420	EnsemblPlants:HORVU3Hr1G018420.2
InterPro:IPR008974	InterPro:IPR013010	InterPro:IPR013083	PFAM:PF03145	PFscan:PS51081	PANTHER:PTHR10315
PANTHER:PTHR10315:SF30	InterPro:SINA-like	SUPFAM:SSF49599	InterPro:TRAF-like	UniParc:UPI000B474939	InterPro:Znf_RING/FYVE/PHD
InterPro:Znf_SIAH	SEG:seg	:	:	:	:

Description

E3 ubiquitin-protein ligase [Source:UniProtKB/TrEMBL;Acc:A0A287KB74]

Coordinates

chrchr3H:+:48363646..48365068

Molecular Weight (calculated)

34975.7 Da

IEP (calculated)

8.068

GRAVY (calculated)

-0.328

Length

317 amino acids

Sequence
(BLAST)

001: CHQSITTRPG FPSSSQPAGR PTLRDPAMQK KSAKKGTKGV GEPNKTMDSS GGSVPKKART TTTAKEEEEI FNVFSLEMDS LECDVCFLPF ESQIYSCKNG
101: HAACGSCCIS MRRKCPTCSE PVGDFRCRAM EKILAGMTRP CRFNKHGCTE TVRYTEARAH EEEACRFAPY SCPFDGCAYR GRLLYGHILD AHAPAGDAAT
201: FKKCTTSNAM VVTVTLQKST PFRTLLHPDE ESVFLLLNGG DVPTARSLSV VRVCPYGAEV DQKAESTAGV LLWWSLSARL ELQFVRQLQG YKAKRFLFVP
301: DDFWGSTDSL DVTVCLW

Best Arabidopsis Sequence Match ( AT5G37870.1 )
(BLAST)

001: MVGVLLSERN GSQKRHCSSI SSDDGRKRVD KTRSAMLTDL DILDCPICYQ ALKIPVFQCG NGHLACSSCC PKLRNKCPAC ALPVGHIRCR AMERVLESVL
101: VPCRYADLGC TKTIYYGRES THEKICNFSP CSCPVQGCNY TGSYKDLYEH YDLTHSTGST AYSFNGVSYI AAMMFISDKI LIERVYEKKL LFVVQCFEEP
201: CGVYVSVSCI APSAPEVGEF SYGLLYTTWE GVTMTYQSPK VKKVLKVSSQ RPKDSFMLIP HSLLCGPLLG MMLCINELKQ M

Arabidopsis Description

Putative E3 ubiquitin-protein ligase SINA-like 6 [Source:UniProtKB/Swiss-Prot;Acc:Q9FKD9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.