Factsheet for Os05t0238200-01

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, cytoskeleton, nucleus

Predictor Summary:

nucleus 3
mitochondrion 2
cytoskeleton 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1D01G134000.1	Wheat	mitochondrion, nucleus, peroxisome, plasma membrane	68.42	98.02
EES19270	Sorghum	cytosol, nucleus, peroxisome	90.86	92.92
Zm00001d010403_P001	Maize	cytoskeleton, nucleus, peroxisome	89.2	92.26
TraesCS1A01G136400.2	Wheat	cytoskeleton, nucleus, peroxisome	87.81	91.35
Os01t0234900-01	Rice	cytoskeleton, nucleus, peroxisome	80.06	83.29
Os02t0293400-01	Rice	cytosol, nucleus, peroxisome	78.67	81.38
HORVU1Hr1G033130.2	Barley	plastid	86.43	77.42
TraesCS1B01G152800.1	Wheat	plastid	86.98	77.15
Os03t0356414-01	Rice	cytosol	60.39	72.43
Os07t0659800-01	Rice	cytosol	59.83	71.52
Os02t0128800-01	Rice	cytosol	57.89	67.86
Os01t0123700-00	Rice	cytosol, mitochondrion, nucleus	18.28	21.85
Os06t0311300-01	Rice	plasma membrane	13.02	18.8
Os01t0125000-00	Rice	nucleus	16.62	17.7
Os01t0125500-00	Rice	mitochondrion	12.19	15.66
Os01t0124900-00	Rice	cytosol	8.59	15.66
Os05t0152900-00	Rice	nucleus	17.17	15.5
Os01t0123800-00	Rice	nucleus	14.13	13.21
Os05t0152600-00	Rice	mitochondrion	17.73	12.45
Os01t0761900-00	Rice	cytosol	4.71	10.43
Os05t0152700-00	Rice	cytosol, extracellular	1.11	4.04

Protein Annotations

MapMan:19.2.2.1.5.3.5	Gene3D:2.60.210.10	Gene3D:3.30.40.10	EntrezGene:4338181	InterPro:7-in-absentia-prot_TRAF-dom	ProteinID:AAU90161.1
ProteinID:BAF16908.1	ProteinID:BAS92953.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006464	GO:GO:0006511
GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0008270	GO:GO:0009056	GO:GO:0009987
GO:GO:0016567	GO:GO:0016740	GO:GO:0016874	GO:GO:0019538	GO:GO:0046872	GO:GO:0061630
InterPro:IPR001841	InterPro:IPR008974	InterPro:IPR013010	InterPro:IPR013083	EnsemblPlantsGene:Os05g0238200	EnsemblPlants:Os05t0238200-01
PFAM:PF03145	PFscan:PS50089	PFscan:PS51081	PANTHER:PTHR10315	PANTHER:PTHR10315:SF42	UniProt:Q60EU0
InterPro:SINA-like	SUPFAM:SSF49599	SUPFAM:SSF57850	InterPro:TRAF-like	UniParc:UPI000044477F	RefSeq:XP_015640384.1
InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	InterPro:Znf_SIAH	SEG:seg	:	:

Description

SKIP interacting protein 33, SKIPa-interacting protein 33, SKIPa-interacting protein 33Similar to Ubiquitin ligase SINAT5 (EC 6.3.2.-) (Seven in absentia homolog 5). (Os05t0238200-01)

Coordinates

chr5:+:8440438..8445684

Molecular Weight (calculated)

39187.7 Da

IEP (calculated)

7.064

GRAVY (calculated)

-0.290

Length

361 amino acids

Sequence
(BLAST)

001: MDMDSVECLS LPDSSMDVDD VDGGGSVHHH HHHHHALPPH LPAGVAVGVG PGGRAFPKAN VAGVGGGGAA GAPAAGGAVA GGGGPGGGPP ATSVHELLEC
101: PVCTNSMFPP IHQCQNGHTL CSTCKARVHN RCPTCRQELG DIRCLALEKV AESLELPCKY CSLGCPEIFP YYSKIKHEAQ CSFRPYNCPY AGSECAVAGD
201: IPFLVAHLRD DHKVDMHSGC TFNHRYVKSN PREVENATWM LTVFHCFGQY FCLHFEAFQL GMAPVYMAFL RFMGDENEAR NYTYSLEVGG NGRKMVWEGT
301: PRSIRDSHRK VRDSHDGLII QRNMALFFSG GDRKELKLRV TGRIWKEQTN PDGACIPNLC S

Best Arabidopsis Sequence Match ( AT3G61790.1 )
(BLAST)

001: MDLDSMDCTS TMDVTDDEEI HQDRHSYASV SKHHHTNNNT TNVNAAASGL LPTTTSVHEL LECPVCTNSM YPPIHQCHNG HTLCSTCKAR VHNRCPTCRQ
101: ELGDIRCLAL EKVAESLELP CKHMSLGCPE IFPYYSKLKH ETVCNFRPYS CPYAGSECSV TGDIPFLVAH LRDDHKVDMH SGCTFNHRYV KSNPREVENA
201: TWMLTVFHCF GQYFCLHFEA FQLGMAPVYM AFLRFMGDET EARNYNYSLE VGGYGRKLIW EGTPRSVRDS HRKVRDSHDG LIIQRNMALF FSGGDRKELK
301: LRVTGRIWKE QQQSGEGGGA CIPNLS

Arabidopsis Description

SINAT3E3 ubiquitin-protein ligase [Source:UniProtKB/TrEMBL;Acc:A0A178V9V8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.