Factsheet for PGSC0003DMT400054414

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
cytosol 3
mitochondrion 2
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, secretory
BaCelLo:	secretory
MultiLoc:	cytosol
Plant-mPloc:	mitochondrion, nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_13s0139g00150.t01	Wine grape	cytosol, nucleus, plastid	89.84	89.84
KRH13409	Soybean	cytosol	86.89	87.17
Os03t0356414-01	Rice	cytosol	84.26	85.38
EER97677	Sorghum	cytosol	83.93	84.77
EER92255	Sorghum	nucleus	83.93	84.77
Solyc02g069880.2.1	Tomato	cytosol	56.07	84.65
Os07t0659800-01	Rice	cytosol	83.61	84.44
Zm00001d029203_P002	Maize	cytosol	83.28	84.11
Zm00001d022401_P002	Maize	cytosol	83.28	84.11
TraesCS4D01G164700.1	Wheat	nucleus	82.3	83.39
TraesCS2D01G131700.1	Wheat	cytosol	80.98	82.06
KRH20763	Soybean	nucleus	87.21	76.22
GSMUA_Achr3P08700_001	Banana	cytosol	85.57	75.65
PGSC0003DMT400060943	Potato	cytosol	57.38	71.43
PGSC0003DMT400060947	Potato	cytosol	57.38	71.43
PGSC0003DMT400023575	Potato	cytosol	73.44	71.34
TraesCS2B01G151100.1	Wheat	plasma membrane	80.98	70.57
PGSC0003DMT400050427	Potato	cytosol	72.46	70.16
PGSC0003DMT400048586	Potato	mitochondrion	72.46	68.85
PGSC0003DMT400081996	Potato	cytosol	68.85	68.18
PGSC0003DMT400010948	Potato	cytosol	68.2	67.1
PGSC0003DMT400000649	Potato	cytosol	72.46	65.77
PGSC0003DMT400018049	Potato	nucleus	71.48	65.47
HORVU2Hr1G022590.1	Barley	nucleus	80.98	65.17
TraesCS1A01G371400.1	Wheat	cytosol	29.84	45.5
PGSC0003DMT400043047	Potato	cytosol	13.44	22.28
PGSC0003DMT400043050	Potato	nucleus	23.93	19.16

Protein Annotations

EntrezGene:102599941	MapMan:19.2.2.1.5.3.5	Gene3D:2.60.210.10	Gene3D:3.30.40.10	InterPro:7-in-absentia-prot_TRAF-dom	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006464	GO:GO:0006511	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0008270
GO:GO:0009056	GO:GO:0009987	GO:GO:0016567	GO:GO:0019538	GO:GO:0046872	InterPro:IPR001841
InterPro:IPR008974	InterPro:IPR013010	InterPro:IPR013083	UniProt:M1BWA5	PFAM:PF03145	EnsemblPlantsGene:PGSC0003DMG400021123
PGSC:PGSC0003DMG400021123	EnsemblPlants:PGSC0003DMT400054414	PFscan:PS50089	PFscan:PS51081	PANTHER:PTHR10315	PANTHER:PTHR10315:SF29
InterPro:SINA-like	SUPFAM:SSF49599	SUPFAM:SSF57850	InterPro:TRAF-like	UniParc:UPI0002949B1D	RefSeq:XP_006353013.1
RefSeq:XP_015166644.1	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	InterPro:Znf_SIAH	:	:

Description

Ubiquitin ligase SINAT5 [Source:PGSC_GENE;Acc:PGSC0003DMG400021123]

Coordinates

chr2:-:29002439..29007854

Molecular Weight (calculated)

34673.7 Da

IEP (calculated)

7.757

GRAVY (calculated)

-0.319

Length

305 amino acids

Sequence
(BLAST)

001: MTAVSPYFDD LRCQPEVIHP PQNEDCTVIG EHMNEPAQHT AKPNVTVSSS VRELLECPVC LNAMYPPIHQ CSNGHTLCSG CKPRVHNRCP TCRHELGNIR
101: CLALEKVAAS LELPCKYQSF GCIGIIPYYS KLKHESQCSF RPYNCPYAGS ECTVIGDIPY IVAHLKDDHK VDMHMGSTFN HRYVKSNPHE VENATWMLTV
201: FSCFGQYFCL HFEAFQLGMA PVYIAFLRFM GDDETAKNFS YSLEVGGNGR KLIWQGVPRS IRDSHRKVRD SFDGLIIQRN MALFFSGGDR KELKLRVTGR
301: IWKEQ

Best Arabidopsis Sequence Match ( AT2G41980.1 )
(BLAST)

001: MAPGGSALKE ALESNSTGVD YEVKMAKVEA NSKPTKSGSG SIGKFHSSNG VYELLECPVC TNLMYPPIHQ CPNGHTLCSS CKLRVQNTCP TCRYELGNIR
101: CLALEKVAES LEVPCRYQNL GCQDIFPYYS KLKHEQHCRF RSYSCPYAGS ECSVTGDIPT LVDHLKDDHK VDMHDGCTFN HRYVKSNPHE VENATWMLTV
201: FNCFGRQFCL HFEAFQLGMA PVYMAFLRFM GDENEAKKFS YSLEVGAHSR KLTWQGIPRS IRDSHRKVRD SQDGLIIPRN LALYFSGSDK EELKLRVTGR
301: IWKEE

Arabidopsis Description

SINAT1E3 ubiquitin-protein ligase [Source:UniProtKB/TrEMBL;Acc:A0A178VZ75]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.