Factsheet for Solyc02g069880.2.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	mitochondrion, nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400054414	Potato	cytosol	84.65	56.07
VIT_13s0139g00150.t01	Wine grape	cytosol, nucleus, plastid	80.2	53.11
KRH13409	Soybean	cytosol	76.73	50.99
Os03t0356414-01	Rice	cytosol	75.25	50.5
EER92255	Sorghum	nucleus	74.26	49.67
Zm00001d029203_P002	Maize	cytosol	74.26	49.67
Os07t0659800-01	Rice	cytosol	74.26	49.67
TraesCS4D01G164700.1	Wheat	nucleus	73.76	49.5
EER97677	Sorghum	cytosol	73.76	49.34
Zm00001d022401_P002	Maize	cytosol	73.27	49.01
TraesCS2D01G131700.1	Wheat	cytosol	72.77	48.84
GSMUA_Achr3P08700_001	Banana	cytosol	76.24	44.64
KRH20763	Soybean	nucleus	76.73	44.41
Solyc03g083270.2.1	Tomato	cytosol	66.34	42.81
TraesCS2B01G151100.1	Wheat	plasma membrane	72.77	42.0
Solyc06g051980.2.1	Tomato	cytosol	64.85	41.59
Solyc10g009420.2.1	Tomato	nucleus	64.36	41.14
Solyc01g006190.2.1	Tomato	cytosol	61.88	40.58
TraesCS1A01G371400.1	Wheat	cytosol	39.6	40.0
Solyc05g050580.2.1	Tomato	nucleus	63.86	38.97
HORVU2Hr1G022590.1	Barley	nucleus	72.77	38.79
Solyc01g096020.2.1	Tomato	cytosol	63.86	38.74
Solyc10g080570.1.1	Tomato	cytosol	54.46	36.3
Solyc03g036460.1.1	Tomato	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	19.31	17.65
Solyc03g034460.2.1	Tomato	nucleus	25.25	14.17
Solyc03g042550.1.1	Tomato	nucleus	23.76	13.33
Solyc03g034450.2.1	Tomato	nucleus	25.74	13.27
Solyc03g042520.1.1	Tomato	nucleus	17.33	11.29
Solyc06g017910.1.1	Tomato	cytosol	2.48	5.75

Protein Annotations

MapMan:19.2.2.1.5.3.5	Gene3D:3.30.40.10	InterPro:7-in-absentia-prot_TRAF-dom	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006464
GO:GO:0006511	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0008270	GO:GO:0009056
GO:GO:0009987	GO:GO:0016567	GO:GO:0016740	GO:GO:0019538	GO:GO:0046872	GO:GO:0061630
InterPro:IPR001841	InterPro:IPR008974	InterPro:IPR013010	InterPro:IPR013083	UniProt:K4B7X0	PFAM:PF03145
PFscan:PS50089	PFscan:PS51081	PANTHER:PTHR10315	PANTHER:PTHR10315:SF29	InterPro:SINA-like	SUPFAM:SSF49599
SUPFAM:SSF57850	EnsemblPlantsGene:Solyc02g069880.2	EnsemblPlants:Solyc02g069880.2.1	InterPro:TRAF-like	UniParc:UPI0002768479	InterPro:Znf_RING
InterPro:Znf_RING/FYVE/PHD	InterPro:Znf_SIAH	SEG:seg	:	:	:

Description

E3 ubiquitin-protein ligase [Source:UniProtKB/TrEMBL;Acc:K4B7X0]

Coordinates

chr2:-:39683434..39687082

Molecular Weight (calculated)

22783.5 Da

IEP (calculated)

7.816

GRAVY (calculated)

-0.182

Length

202 amino acids

Sequence
(BLAST)

001: MDIGEHMNEP AQHTAKPNVT VSSSVRELLE CPVCLNAMYP PIHQCSNGHT LCSGCKPRVH NRCPTCRHEL GNIRCLALEK VAASLELPCK YQNFGCIGII
101: PYYSKLKHES QCSFRPYNCP YAGSDCTVIG DIPYIVAHLK DDHKVDMHMG STFNHRYVKS KPHEVENATW MLTLLWSVLL FTLRSISTWN GTSLYCIFTV
201: HG

Best Arabidopsis Sequence Match ( AT3G58040.1 )
(BLAST)

001: MAPGGSALKE VMESNSTGMD YEVKTAKVEV NNNKPTKPGS AGIGKYGIHS NNGVYELLEC PVCTNLMYPP IHQCPNGHTL CSNCKLRVQN TCPTCRYELG
101: NIRCLALEKV AESLEVPCRY QNLGCHDIFP YYSKLKHEQH CRFRPYTCPY AGSECSVTGD IPTLVVHLKD DHKVDMHDGC TFNHRYVKSN PHEVENATWM
201: LTVFNCFGRQ FCLHFEAFQL GMAPVYMAFL RFMGDENEAK KFSYSLEVGA HGRKLTWQGI PRSIRDSHRK VRDSQDGLII PRNLALYFSG GDRQELKLRV
301: TGRIWKEE

Arabidopsis Description

SINAT2E3 ubiquitin-protein ligase [Source:UniProtKB/TrEMBL;Acc:A0A178VHN9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.