Factsheet for Solyc03g083270.2.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	mitochondrion, nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400023575	Potato	cytosol	99.36	99.04
Solyc06g051980.2.1	Tomato	cytosol	90.73	90.16
VIT_02s0025g01660.t01	Wine grape	cytosol	89.46	88.61
Solyc10g009420.2.1	Tomato	nucleus	84.34	83.54
CDX92848	Canola	nucleus	79.23	81.31
GSMUA_Achr5P06970_001	Banana	cytosol	84.03	81.17
Solyc01g096020.2.1	Tomato	cytosol	86.26	81.08
Bra010392.1-P	Field mustard	nucleus	81.79	80.0
CDY14268	Canola	nucleus	81.79	80.0
Solyc05g050580.2.1	Tomato	nucleus	84.34	79.76
CDX97399	Canola	nucleus	81.47	79.44
CDY19018	Canola	nucleus	81.15	78.88
CDX89221	Canola	nucleus	81.15	78.88
Bra026301.1-P	Field mustard	nucleus	81.15	78.88
AT4G27880.1	Thale cress	nucleus	81.15	77.68
Solyc02g069880.2.1	Tomato	cytosol	42.81	66.34
Solyc01g006190.2.1	Tomato	cytosol	64.22	65.26
Solyc10g080570.1.1	Tomato	cytosol	58.79	60.73
VIT_15s0046g00400.t01	Wine grape	cytosol	49.52	57.41
VIT_00s0426g00040.t01	Wine grape	mitochondrion	42.49	55.19
Solyc06g017910.1.1	Tomato	cytosol	15.34	55.17
VIT_15s0046g00390.t01	Wine grape	nucleus	46.01	53.53
VIT_15s0046g00410.t01	Wine grape	cytosol	30.03	51.93
VIT_15s0046g00380.t01	Wine grape	cytosol	37.38	46.99
VIT_00s0726g00020.t01	Wine grape	extracellular	17.25	46.96
VIT_00s0663g00030.t01	Wine grape	cytosol, extracellular, nucleus	15.65	46.23
Solyc03g036460.1.1	Tomato	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	16.61	23.53
Solyc03g034460.2.1	Tomato	nucleus	19.81	17.22
Solyc03g034450.2.1	Tomato	nucleus	21.09	16.84
Solyc03g042550.1.1	Tomato	nucleus	18.85	16.39
Solyc03g042520.1.1	Tomato	nucleus	15.65	15.81

Protein Annotations

MapMan:19.2.2.1.5.3.5	Gene3D:2.60.210.10	Gene3D:3.30.40.10	InterPro:7-in-absentia-prot_TRAF-dom	GO:GO:0003674	GO:GO:0003824
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006464	GO:GO:0006511	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0008270
GO:GO:0009056	GO:GO:0009987	GO:GO:0016567	GO:GO:0016740	GO:GO:0019538	GO:GO:0046872
GO:GO:0061630	InterPro:IPR001841	InterPro:IPR008974	InterPro:IPR013010	InterPro:IPR013083	UniProt:K4BIA3
PFAM:PF03145	PFscan:PS50089	PFscan:PS51081	PANTHER:PTHR10315	PANTHER:PTHR10315:SF42	InterPro:SINA-like
SUPFAM:SSF49599	SUPFAM:SSF57850	EnsemblPlantsGene:Solyc03g083270.2	EnsemblPlants:Solyc03g083270.2.1	InterPro:TRAF-like	UniParc:UPI0002768AFE
InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	InterPro:Znf_SIAH	:	:	:

Description

E3 ubiquitin-protein ligase [Source:UniProtKB/TrEMBL;Acc:K4BIA3]

Coordinates

chr3:+:53114666..53119114

Molecular Weight (calculated)

35743.7 Da

IEP (calculated)

6.801

GRAVY (calculated)

-0.407

Length

313 amino acids

Sequence
(BLAST)

001: MEMENIECVS TTDGIEDEEI QLSHNQFSSA KPHNILFPGL APTSVHELLE CPVCTNSMYP PIHQCHNGHT LCSTCKTRVH NRCPTCRQEL GDIRCLALEK
101: VAESLELPCK YFSLGCPEIF PYYSKLKHEA LCNFRPYNCP YAGSECSVTG DIPYLVSHLR DDHKVDMHTG CTFNHRYVKS NPREVENATW MLTVFHCFGQ
201: YFCLHFEAFQ LGMAPVYMAF LRFMGDESEA RNYSYSLEVG GNGRKLIWEG TPRSVRDSHR KVRDSHDGLI IQRNMALFFS GGDRKELKLR VTGRIWKEQQ
301: NPEGGVCIPN LCS

Best Arabidopsis Sequence Match ( AT3G61790.1 )
(BLAST)

001: MDLDSMDCTS TMDVTDDEEI HQDRHSYASV SKHHHTNNNT TNVNAAASGL LPTTTSVHEL LECPVCTNSM YPPIHQCHNG HTLCSTCKAR VHNRCPTCRQ
101: ELGDIRCLAL EKVAESLELP CKHMSLGCPE IFPYYSKLKH ETVCNFRPYS CPYAGSECSV TGDIPFLVAH LRDDHKVDMH SGCTFNHRYV KSNPREVENA
201: TWMLTVFHCF GQYFCLHFEA FQLGMAPVYM AFLRFMGDET EARNYNYSLE VGGYGRKLIW EGTPRSVRDS HRKVRDSHDG LIIQRNMALF FSGGDRKELK
301: LRVTGRIWKE QQQSGEGGGA CIPNLS

Arabidopsis Description

SINAT3E3 ubiquitin-protein ligase [Source:UniProtKB/TrEMBL;Acc:A0A178V9V8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.