Factsheet for VIT_02s0025g01660.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
mitochondrion 2
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	mitochondrion, nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_01s0010g02240.t01
VIT_17s0000g07490.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G61790.1	VIT_17s0000g07490.t01	AT1G19010.1	21798944
AT3G61790.1	VIT_01s0010g02240.t01	AT3G26050.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400023575	Potato	cytosol	89.24	89.81
Solyc03g083270.2.1	Tomato	cytosol	88.61	89.46
PGSC0003DMT400050427	Potato	cytosol	86.71	86.98
GSMUA_Achr6P22600_001	Banana	cytosol	85.76	86.58
VIT_16s0098g01850.t01	Wine grape	cytosol	89.56	86.54
Solyc06g051980.2.1	Tomato	cytosol	85.44	85.71
Solyc10g009420.2.1	Tomato	nucleus	85.13	85.13
PGSC0003DMT400048586	Potato	mitochondrion	86.39	85.05
KRG97189	Soybean	nucleus	84.49	85.03
Solyc01g096020.2.1	Tomato	cytosol	88.61	84.08
PGSC0003DMT400000649	Potato	cytosol	88.61	83.33
CDX92848	Canola	nucleus	79.11	81.97
Bra003473.1-P	Field mustard	nucleus	82.28	81.76
CDX67865	Canola	nucleus	83.23	81.42
CDY25077	Canola	nucleus	83.23	81.42
PGSC0003DMT400018049	Potato	nucleus	85.76	81.38
Solyc05g050580.2.1	Tomato	nucleus	85.13	81.27
Bra010392.1-P	Field mustard	nucleus	81.65	80.62
CDY14268	Canola	nucleus	81.65	80.62
CDY19018	Canola	nucleus	81.96	80.43
Bra026301.1-P	Field mustard	nucleus	81.65	80.12
CDX89221	Canola	nucleus	81.65	80.12
CDX97399	Canola	nucleus	81.33	80.06
AT4G27880.1	Thale cress	nucleus	82.59	79.82
AT3G61790.1	Thale cress	nucleus	82.28	79.75
KRH68916	Soybean	nucleus	82.28	79.27
CDX89132	Canola	cytosol	81.33	78.83
CDY43950	Canola	nucleus	81.01	78.77
Bra014421.1-P	Field mustard	cytosol	79.43	78.44
VIT_13s0139g00150.t01	Wine grape	cytosol, nucleus, plastid	70.25	72.79
VIT_08s0007g06740.t01	Wine grape	cytosol	70.25	70.48
VIT_06s0004g01130.t01	Wine grape	cytosol	68.04	69.81
GSMUA_Achr10P...	Banana	cytosol, nucleus, plastid	70.89	64.37
VIT_15s0046g00400.t01	Wine grape	cytosol	49.05	57.41
VIT_00s0426g00040.t01	Wine grape	mitochondrion	41.77	54.77
VIT_15s0046g00410.t01	Wine grape	cytosol	30.7	53.59
VIT_15s0046g00390.t01	Wine grape	nucleus	45.57	53.53
VIT_15s0046g00380.t01	Wine grape	cytosol	38.29	48.59
VIT_00s0726g00020.t01	Wine grape	extracellular	16.77	46.09
VIT_00s0663g00030.t01	Wine grape	cytosol, extracellular, nucleus	15.19	45.28
VIT_14s0006g01870.t01	Wine grape	cytosol	13.92	22.0

Protein Annotations

EntrezGene:100233084	MapMan:19.2.2.1.5.3.5	Gene3D:2.60.210.10	Gene3D:3.30.40.10	InterPro:7-in-absentia-prot_TRAF-dom	ProteinID:CBI34502
ProteinID:CBI34502.3	UniProt:D7TVH7	EMBL:FN596251	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006464
GO:GO:0006511	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0008270	GO:GO:0009056
GO:GO:0009987	GO:GO:0016567	GO:GO:0016740	GO:GO:0019538	GO:GO:0046872	GO:GO:0061630
InterPro:IPR001841	InterPro:IPR008974	InterPro:IPR013010	InterPro:IPR013083	RefSeq:NP_001268042	RefSeq:NP_001268042.1
PFAM:PF03145	PFscan:PS50089	PFscan:PS51081	PANTHER:PTHR10315	PANTHER:PTHR10315:SF42	InterPro:SINA-like
SUPFAM:SSF49599	SUPFAM:SSF57850	TIGR:TC61039	InterPro:TRAF-like	UniParc:UPI00015CD42A	ArrayExpress:VIT_02s0025g01660
EnsemblPlantsGene:VIT_02s0025g01660	EnsemblPlants:VIT_02s0025g01660.t01	unigene:Vvi.113	RefSeq:XP_010658063.1	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD
InterPro:Znf_SIAH	SEG:seg	:	:	:	:

Description

E3 ubiquitin-protein ligase [Source:UniProtKB/TrEMBL;Acc:D7TVH7]

Coordinates

chr2:-:1595237..1600680

Molecular Weight (calculated)

35937.8 Da

IEP (calculated)

6.995

GRAVY (calculated)

-0.367

Length

316 amino acids

Sequence
(BLAST)

001: MEIDSIECVS STDGIYEEEI HHHHHQFSSS SKPHSNVVSP AISPATSVHE LLECPVCTNS MYPPIHQCHN GHTLCSTCKS RVHNRCPTCR QELGDIRCLA
101: LEKVAESLEL PCKYCSLGCP EIFPYYSKLK HEAQCNFRPY NCPYAGSECA VVGDIPFLVS HLRDDHKVDM HTGCTFNHRY VKSNPREVEN ATWMLTVFNC
201: FGQYFCLHFE AFQLGMAPVY MAFLRFMGDE IEARNFSYSL EVGANGRKLI WEGTPRSIRD SHKKVRDSHD GLIIQRNMAL FFSGGDRKEL KLRVTGRIWK
301: EQQNPDAGVC IPNLCS

Best Arabidopsis Sequence Match ( AT3G61790.1 )
(BLAST)

001: MDLDSMDCTS TMDVTDDEEI HQDRHSYASV SKHHHTNNNT TNVNAAASGL LPTTTSVHEL LECPVCTNSM YPPIHQCHNG HTLCSTCKAR VHNRCPTCRQ
101: ELGDIRCLAL EKVAESLELP CKHMSLGCPE IFPYYSKLKH ETVCNFRPYS CPYAGSECSV TGDIPFLVAH LRDDHKVDMH SGCTFNHRYV KSNPREVENA
201: TWMLTVFHCF GQYFCLHFEA FQLGMAPVYM AFLRFMGDET EARNYNYSLE VGGYGRKLIW EGTPRSVRDS HRKVRDSHDG LIIQRNMALF FSGGDRKELK
301: LRVTGRIWKE QQQSGEGGGA CIPNLS

Arabidopsis Description

SINAT3E3 ubiquitin-protein ligase [Source:UniProtKB/TrEMBL;Acc:A0A178V9V8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.