Factsheet for Bra008328.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
mitochondrion 4
cytosol 2
nucleus 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:	plastid
iPSORT:	mitochondrion
MultiLoc:	cytosol
Plant-mPloc:	mitochondrion, nucleus
PProwler:	mitochondrion
TargetP:	secretory
WoLF PSORT:	mitochondrion
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY64066	Canola	cytosol	98.15	98.15
Bra003315.1-P	Field mustard	cytosol, nucleus, plastid	85.19	35.38
Bra007376.1-P	Field mustard	cytosol	86.11	33.7
Bra000249.1-P	Field mustard	nucleus	95.37	33.55
Bra016898.1-P	Field mustard	cytosol	89.81	31.8
Bra014589.1-P	Field mustard	nucleus	83.33	30.82
PGSC0003DMT400060947	Potato	cytosol	66.67	29.39
PGSC0003DMT400060943	Potato	cytosol	66.67	29.39
Bra001519.1-P	Field mustard	nucleus	53.7	27.1
VIT_08s0007g06740.t01	Wine grape	cytosol	76.85	26.35
KRH67087	Soybean	nucleus	77.78	24.85
KRG95412	Soybean	nucleus	77.78	24.56
Bra003473.1-P	Field mustard	nucleus	70.37	23.9
Bra014421.1-P	Field mustard	cytosol	70.37	23.75
Bra010392.1-P	Field mustard	nucleus	69.44	23.44
Bra026301.1-P	Field mustard	nucleus	69.44	23.29
Solyc10g080570.1.1	Tomato	cytosol	64.81	23.1
Bra018266.1-P	Field mustard	plastid	12.04	4.5
Bra025434.1-P	Field mustard	nucleus	11.11	4.23
Bra004401.1-P	Field mustard	cytosol, mitochondrion, nucleus	10.19	4.09
Bra022858.1-P	Field mustard	nucleus	11.11	3.95
Bra000425.1-P	Field mustard	nucleus	9.26	3.53
Bra004402.1-P	Field mustard	nucleus	10.19	3.47
Bra004174.1-P	Field mustard	nucleus	11.11	3.4
Bra012354.1-P	Field mustard	cytosol	8.33	3.31
Bra019710.1-P	Field mustard	nucleus	10.19	3.22
Bra028395.1-P	Field mustard	nucleus	9.26	3.09
Bra004176.1-P	Field mustard	nucleus	9.26	2.97

Protein Annotations

MapMan:19.2.2.1.5.3.5	Gene3D:2.60.210.10	InterPro:7-in-absentia-prot_TRAF-dom	EnsemblPlantsGene:Bra008328	EnsemblPlants:Bra008328.1	EnsemblPlants:Bra008328.1-P
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006464	GO:GO:0006511	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152
GO:GO:0009056	GO:GO:0009987	GO:GO:0016567	GO:GO:0019538	GO:GO:0046872	InterPro:IPR008974
UniProt:M4CVT1	PFAM:PF03145	PANTHER:PTHR10315	PANTHER:PTHR10315:SF73	InterPro:SINA-like	SUPFAM:SSF49599
InterPro:TRAF-like	UniParc:UPI00025462E8	:	:	:	:

Description

AT2G41980 (E=2e-050) | seven in absentia (SINA) family protein

Coordinates

chrA02:-:14735235..14735561

Molecular Weight (calculated)

12713.3 Da

IEP (calculated)

10.463

GRAVY (calculated)

-0.688

Length

108 amino acids

Sequence
(BLAST)

001: MSKVEATNKQ FCLHFEAFQL GRAPVYMAFL RFMGDENEAK KFNYSLEVGA HSRKLTWQGI PRSIRDGHRK FRDSQDGLII PRNMALFFSG SDKEERKLRV
101: TGRIWREE

Best Arabidopsis Sequence Match ( AT2G41980.1 )
(BLAST)

001: MAPGGSALKE ALESNSTGVD YEVKMAKVEA NSKPTKSGSG SIGKFHSSNG VYELLECPVC TNLMYPPIHQ CPNGHTLCSS CKLRVQNTCP TCRYELGNIR
101: CLALEKVAES LEVPCRYQNL GCQDIFPYYS KLKHEQHCRF RSYSCPYAGS ECSVTGDIPT LVDHLKDDHK VDMHDGCTFN HRYVKSNPHE VENATWMLTV
201: FNCFGRQFCL HFEAFQLGMA PVYMAFLRFM GDENEAKKFS YSLEVGAHSR KLTWQGIPRS IRDSHRKVRD SQDGLIIPRN LALYFSGSDK EELKLRVTGR
301: IWKEE

Arabidopsis Description

SINAT1E3 ubiquitin-protein ligase [Source:UniProtKB/TrEMBL;Acc:A0A178VZ75]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.