Factsheet for AT2G41980.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
AT3G58040.3	Thale cress	cytosol	93.44	92.53
CDY06889	Canola	cytosol	88.52	90.91
CDY14808	Canola	cytosol	89.51	90.4
Bra016898.1-P	Field mustard	cytosol	88.85	88.85
VIT_08s0007g06740.t01	Wine grape	cytosol	81.31	78.73
PGSC0003DMT400060947	Potato	cytosol	60.98	75.92
PGSC0003DMT400060943	Potato	cytosol	60.98	75.92
KRH67087	Soybean	nucleus	80.98	73.08
KRG95412	Soybean	nucleus	80.66	71.93
AT5G53360.1	Thale cress	plasma membrane	54.43	71.24
Solyc10g080570.1.1	Tomato	cytosol	66.23	66.67
AT4G27880.1	Thale cress	nucleus	69.84	65.14
AT3G61790.1	Thale cress	nucleus	68.85	64.42
AT3G13672.2	Thale cress	nucleus	38.03	47.74
AT5G37910.1	Thale cress	nucleus	20.66	22.83
AT5G37870.1	Thale cress	nucleus	20.98	22.78
AT5G37890.1	Thale cress	nucleus	20.66	22.03
AT1G66630.1	Thale cress	cytosol	20.98	21.12
AT5G37900.1	Thale cress	nucleus	15.41	19.5
AT5G37930.1	Thale cress	nucleus	22.3	19.48
AT1G66620.1	Thale cress	nucleus	19.34	18.85
AT1G66650.1	Thale cress	nucleus	20.33	18.84
AT1G66610.1	Thale cress	nucleus	21.97	18.31
AT5G62800.1	Thale cress	nucleus	20.66	18.1
AT1G66660.2	Thale cress	nucleus	19.34	16.95

Protein Annotations

MapMan:19.2.2.1.5.3.5	Gene3D:2.60.210.10	Gene3D:3.30.40.10	InterPro:7-in-absentia-prot_TRAF-dom	EntrezGene:818798	UniProt:A0A178VZ75
ProteinID:AAB63545.1	ProteinID:AEC10058.1	ArrayExpress:AT2G41980	EnsemblPlantsGene:AT2G41980	RefSeq:AT2G41980	TAIR:AT2G41980
RefSeq:AT2G41980-TAIR-G	EnsemblPlants:AT2G41980.1	TAIR:AT2G41980.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006464
GO:GO:0006511	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0008270	GO:GO:0009056
GO:GO:0009987	GO:GO:0016043	GO:GO:0016567	GO:GO:0016740	GO:GO:0019538	GO:GO:0046872
GO:GO:0061630	GO:GO:2000785	InterPro:IPR001841	InterPro:IPR008974	InterPro:IPR013010	InterPro:IPR013083
RefSeq:NP_181729.1	ProteinID:OAP10393.1	UniProt:P93748	PFAM:PF03145	PO:PO:0000013	PO:PO:0000037
PO:PO:0000230	PO:PO:0000293	PO:PO:0001016	PO:PO:0001017	PO:PO:0001054	PO:PO:0001078
PO:PO:0001081	PO:PO:0001185	PO:PO:0004507	PO:PO:0007064	PO:PO:0007095	PO:PO:0007098
PO:PO:0007103	PO:PO:0007115	PO:PO:0007123	PO:PO:0007611	PO:PO:0007616	PO:PO:0008019
PO:PO:0009005	PO:PO:0009006	PO:PO:0009009	PO:PO:0009010	PO:PO:0009025	PO:PO:0009029
PO:PO:0009030	PO:PO:0009031	PO:PO:0009032	PO:PO:0009046	PO:PO:0009047	PO:PO:0009052
PO:PO:0020030	PO:PO:0020038	PO:PO:0020100	PO:PO:0020137	PO:PO:0025022	PO:PO:0025195
PO:PO:0025281	PFscan:PS50089	PFscan:PS51081	PANTHER:PTHR10315	PANTHER:PTHR10315:SF73	InterPro:SINA-like
SUPFAM:SSF49599	SUPFAM:SSF57850	InterPro:TRAF-like	UniParc:UPI00000A98C2	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD
InterPro:Znf_SIAH	:	:	:	:	:

Description

SINAT1E3 ubiquitin-protein ligase [Source:UniProtKB/TrEMBL;Acc:A0A178VZ75]

Coordinates

chr2:-:17523071..17526126

Molecular Weight (calculated)

34559.2 Da

IEP (calculated)

7.762

GRAVY (calculated)

-0.469

Length

305 amino acids

Sequence
(BLAST)

001: MAPGGSALKE ALESNSTGVD YEVKMAKVEA NSKPTKSGSG SIGKFHSSNG VYELLECPVC TNLMYPPIHQ CPNGHTLCSS CKLRVQNTCP TCRYELGNIR
101: CLALEKVAES LEVPCRYQNL GCQDIFPYYS KLKHEQHCRF RSYSCPYAGS ECSVTGDIPT LVDHLKDDHK VDMHDGCTFN HRYVKSNPHE VENATWMLTV
201: FNCFGRQFCL HFEAFQLGMA PVYMAFLRFM GDENEAKKFS YSLEVGAHSR KLTWQGIPRS IRDSHRKVRD SQDGLIIPRN LALYFSGSDK EELKLRVTGR
301: IWKEE

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.