Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 2
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH06910 | Soybean | nucleus | 89.39 | 85.51 |
| VIT_14s0068g01690.t01 | Wine grape | nucleus | 74.24 | 82.77 |
| PGSC0003DMT400052203 | Potato | nucleus | 50.61 | 71.98 |
| PGSC0003DMT400090661 | Potato | nucleus | 57.58 | 68.1 |
| Solyc02g068200.1.1 | Tomato | nucleus | 55.45 | 67.28 |
| CDY20065 | Canola | cytosol | 48.18 | 59.11 |
| AT3G27010.1 | Thale cress | nucleus | 54.85 | 57.64 |
| Bra039096.1-P | Field mustard | nucleus | 48.18 | 57.19 |
| CDY00171 | Canola | nucleus | 47.58 | 56.88 |
| Bra025244.1-P | Field mustard | nucleus | 52.73 | 56.68 |
| CDY13675 | Canola | nucleus | 53.33 | 56.59 |
| CDY52403 | Canola | nucleus | 50.3 | 54.43 |
| GSMUA_Achr5P25030_001 | Banana | nucleus | 44.24 | 50.87 |
| Zm00001d011985_P001 | Maize | nucleus | 39.39 | 41.27 |
| Os01t0924400-01 | Rice | nucleus | 39.39 | 41.01 |
| EES01992 | Sorghum | nucleus | 39.7 | 40.31 |
| Zm00001d042305_P001 | Maize | cytosol, mitochondrion, nucleus | 39.09 | 39.81 |
| KRH30615 | Soybean | cytosol | 18.48 | 39.1 |
| TraesCS3D01G428700.1 | Wheat | nucleus | 38.18 | 37.5 |
| TraesCS3A01G436100.1 | Wheat | nucleus, plastid | 38.48 | 37.24 |
| TraesCS3B01G470700.1 | Wheat | nucleus | 37.88 | 35.82 |
| KRH32533 | Soybean | plastid | 20.0 | 34.74 |
| KRH19921 | Soybean | plastid | 19.39 | 34.59 |
| KRH49755 | Soybean | nucleus | 19.7 | 32.83 |
| KRG89108 | Soybean | nucleus, plastid | 22.73 | 32.33 |
| KRH36141 | Soybean | nucleus | 23.33 | 31.3 |
| KRG90619 | Soybean | nucleus | 22.73 | 30.99 |
| KRH40904 | Soybean | nucleus | 22.42 | 30.96 |
| KRH40902 | Soybean | nucleus | 22.42 | 30.83 |
| KRH45889 | Soybean | nucleus | 26.36 | 30.42 |
| KRG99108 | Soybean | nucleus | 24.85 | 30.04 |
| KRH06094 | Soybean | plastid | 30.3 | 27.7 |
| HORVU3Hr1G095400.2 | Barley | golgi, plasma membrane | 37.58 | 26.67 |
| KRH35393 | Soybean | nucleus | 24.85 | 26.37 |
| KRG91429 | Soybean | nucleus | 25.15 | 25.46 |
| KRH63357 | Soybean | nucleus | 30.0 | 24.87 |
| KRH70699 | Soybean | nucleus | 31.52 | 24.53 |
| KRH54542 | Soybean | nucleus | 30.3 | 24.51 |
| KRH56919 | Soybean | nucleus | 30.61 | 24.28 |
| KRH26343 | Soybean | nucleus, plastid | 31.82 | 24.19 |
| KRH03466 | Soybean | nucleus | 30.0 | 23.97 |
| KRH48289 | Soybean | nucleus | 24.24 | 23.88 |
| KRH03994 | Soybean | nucleus | 24.55 | 23.82 |
| KRH65181 | Soybean | nucleus | 24.24 | 23.81 |
| KRH74835 | Soybean | nucleus | 27.58 | 23.64 |
| KRH57263 | Soybean | nucleus | 24.55 | 23.41 |
Protein Annotations
| MapMan:15.5.19 | MapMan:27.1.5.2 | EMBL:ACUP02011990 | EnsemblPlantsGene:GLYMA_19G095300 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009987 | UniProt:I1N7U7 | InterPro:IPR017887 | EnsemblPlants:KRG94577 | ProteinID:KRG94577 | ProteinID:KRG94577.1 |
| PFAM:PF03634 | PFscan:PS51369 | PANTHER:PTHR31072 | PANTHER:PTHR31072:SF4 | InterPro:TF_TCP_subgr | InterPro:Transcription_factor_TCP |
| UniParc:UPI000233F5CD | SEG:seg | : | : | : | : |
Description
hypothetical protein
Coordinates
chr19:+:33695647..33697523
Molecular Weight (calculated)
35323.2 Da
IEP (calculated)
9.494
GRAVY (calculated)
-0.735
Length
330 amino acids
Sequence
(BLAST)
(BLAST)
001: MDPKGSKQQQ PQEVVPKFLS LPQHHYQQQG NSNNNNMGEN KPSEVKDFQI VVAAEKDESK KQQQLAPKRS SNKDRHTKVE GRGRRIRMPA LCAARIFQLT
101: RELGHKSDGE TIQWLLQQAE PSIIAATGTG TIPASALAAA GNSLSPQGSS LSSALHHQHQ KIDELGCGSG GSSRASWQMV GGNLGRPHLG VATTGLWPPH
201: VSGFGFQTAT TTTTTTSSGP SNATLATESS NYLQKIAFPG FDLPTSATNM GHMSFTSILG GAGSQQMPGL ELGLSQDGHI GVLNPQALNQ IYQQMNHQAQ
301: AGRVHQQHQH QQQQHQQTPA KDDSQGSGGQ
101: RELGHKSDGE TIQWLLQQAE PSIIAATGTG TIPASALAAA GNSLSPQGSS LSSALHHQHQ KIDELGCGSG GSSRASWQMV GGNLGRPHLG VATTGLWPPH
201: VSGFGFQTAT TTTTTTSSGP SNATLATESS NYLQKIAFPG FDLPTSATNM GHMSFTSILG GAGSQQMPGL ELGLSQDGHI GVLNPQALNQ IYQQMNHQAQ
301: AGRVHQQHQH QQQQHQQTPA KDDSQGSGGQ
001: MDPKNLNRHQ VPNFLNPPPP PRNQGLVDDD AASAVVSDEN RKPTTEIKDF QIVVSASDKE PNKKSQNQNQ LGPKRSSNKD RHTKVEGRGR RIRMPALCAA
101: RIFQLTRELG HKSDGETIQW LLQQAEPSII AATGSGTIPA SALASSAATS NHHQGGSLTA GLMISHDLDG GSSSSGRPLN WGIGGGEGVS RSSLPTGLWP
201: NVAGFGSGVP TTGLMSEGAG YRIGFPGFDF PGVGHMSFAS ILGGNHNQMP GLELGLSQEG NVGVLNPQSF TQIYQQMGQA QAQAQGRVLH HMHHNHEEHQ
301: QESGEKDDSQ GSGR
101: RIFQLTRELG HKSDGETIQW LLQQAEPSII AATGSGTIPA SALASSAATS NHHQGGSLTA GLMISHDLDG GSSSSGRPLN WGIGGGEGVS RSSLPTGLWP
201: NVAGFGSGVP TTGLMSEGAG YRIGFPGFDF PGVGHMSFAS ILGGNHNQMP GLELGLSQEG NVGVLNPQSF TQIYQQMGQA QAQAQGRVLH HMHHNHEEHQ
301: QESGEKDDSQ GSGR
Arabidopsis Description
TCP20TCP20 [Source:UniProtKB/TrEMBL;Acc:A0A178VAT1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.