Factsheet for PGSC0003DMT400052203

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_14s0068g01690.t01	Wine grape	nucleus	76.29	59.8
PGSC0003DMT400090661	Potato	nucleus	70.69	58.78
Solyc02g068200.1.1	Tomato	nucleus	68.1	58.09
KRG94577	Soybean	nucleus	71.98	50.61
KRH06910	Soybean	nucleus	70.26	47.25
CDY20065	Canola	cytosol	53.45	46.1
Bra025244.1-P	Field mustard	nucleus	59.91	45.28
AT3G27010.1	Thale cress	nucleus	61.21	45.22
Bra039096.1-P	Field mustard	nucleus	53.88	44.96
CDY13675	Canola	nucleus	59.91	44.69
CDY00171	Canola	nucleus	51.72	43.48
CDY52403	Canola	nucleus	56.9	43.28
GSMUA_Achr5P25030_001	Banana	nucleus	50.43	40.77
PGSC0003DMT400055541	Potato	plastid	31.03	35.82
Zm00001d011985_P001	Maize	nucleus	44.4	32.7
Os01t0924400-01	Rice	nucleus	44.4	32.49
EES01992	Sorghum	nucleus	44.83	32.0
Zm00001d042305_P001	Maize	cytosol, mitochondrion, nucleus	44.4	31.79
TraesCS3D01G428700.1	Wheat	nucleus	43.1	29.76
TraesCS3A01G436100.1	Wheat	nucleus, plastid	43.1	29.33
TraesCS3B01G470700.1	Wheat	nucleus	43.1	28.65
PGSC0003DMT400067150	Potato	nucleus, plastid	33.62	23.85
PGSC0003DMT400001613	Potato	nucleus	40.95	22.95
PGSC0003DMT400083148	Potato	nucleus	40.09	22.68
PGSC0003DMT400094424	Potato	cytosol	23.71	22.45
PGSC0003DMT400088049	Potato	cytosol	25.0	21.48
HORVU3Hr1G095400.2	Barley	golgi, plasma membrane	42.67	21.29
PGSC0003DMT400095626	Potato	plastid	25.0	20.71
PGSC0003DMT400008728	Potato	nucleus	32.33	20.22
PGSC0003DMT400023981	Potato	nucleus	32.33	19.28
PGSC0003DMT400062327	Potato	nucleus	29.74	18.85
PGSC0003DMT400058534	Potato	nucleus	28.02	17.38
PGSC0003DMT400064164	Potato	nucleus	38.36	16.67
PGSC0003DMT400042166	Potato	cytosol	30.6	15.85

Protein Annotations

EntrezGene:102586089	MapMan:15.5.19	MapMan:27.1.5.2	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
InterPro:IPR017887	UniProt:M1BSZ4	PFAM:PF03634	EnsemblPlantsGene:PGSC0003DMG400020247	PGSC:PGSC0003DMG400020247	EnsemblPlants:PGSC0003DMT400052203
PFscan:PS51369	PANTHER:PTHR31072	PANTHER:PTHR31072:SF4	InterPro:TF_TCP_subgr	InterPro:Transcription_factor_TCP	UniParc:UPI00029490A4
RefSeq:XP_006338808.2	:	:	:	:	:

Description

Transcription factor [Source:PGSC_GENE;Acc:PGSC0003DMG400020247]

Coordinates

chr2:+:48094057..48097027

Molecular Weight (calculated)

25080.5 Da

IEP (calculated)

7.237

GRAVY (calculated)

-0.586

Length

232 amino acids

Sequence
(BLAST)

001: MEIKDLQIEI AEKDEAKKHQ LAPKRKSNKD RHTKVEGRGR RIRMPALCAA RIFQLTRELG HKSDGETIQW LLQQAEPSII AATGNGTIPA SALAAAGPSV
101: SQQGISVSAG LQQNMDGSIS NSSSRTSWPM AQLATTGIWP PSAPDVTNFG HNLGTESLQK ISFPVFDLPS TNLSFTSMLG ATNLPGLELG LSQDAHMNSQ
201: SLNQIYQQMG HSRMHQQQQP SPEDDNSQGS GQ

Best Arabidopsis Sequence Match ( AT3G27010.1 )
(BLAST)

001: MDPKNLNRHQ VPNFLNPPPP PRNQGLVDDD AASAVVSDEN RKPTTEIKDF QIVVSASDKE PNKKSQNQNQ LGPKRSSNKD RHTKVEGRGR RIRMPALCAA
101: RIFQLTRELG HKSDGETIQW LLQQAEPSII AATGSGTIPA SALASSAATS NHHQGGSLTA GLMISHDLDG GSSSSGRPLN WGIGGGEGVS RSSLPTGLWP
201: NVAGFGSGVP TTGLMSEGAG YRIGFPGFDF PGVGHMSFAS ILGGNHNQMP GLELGLSQEG NVGVLNPQSF TQIYQQMGQA QAQAQGRVLH HMHHNHEEHQ
301: QESGEKDDSQ GSGR

Arabidopsis Description

TCP20TCP20 [Source:UniProtKB/TrEMBL;Acc:A0A178VAT1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.