Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc05g007420.1.1 | Tomato | nucleus | 93.53 | 90.6 |
| VIT_01s0026g02200.t01 | Wine grape | nucleus | 40.43 | 42.49 |
| KRH49755 | Soybean | nucleus | 21.02 | 39.39 |
| Bra003986.1-P | Field mustard | cytosol | 25.61 | 38.78 |
| AT1G69690.1 | Thale cress | nucleus, plastid | 33.96 | 38.77 |
| CDY68276 | Canola | nucleus, plastid | 33.42 | 38.63 |
| Bra004407.1-P | Field mustard | nucleus, plastid | 33.42 | 38.63 |
| CDY01754 | Canola | nucleus, plastid | 33.42 | 38.39 |
| CDY28576 | Canola | nucleus | 32.88 | 38.36 |
| CDY28577 | Canola | cytosol | 24.8 | 37.86 |
| PGSC0003DMT400083148 | Potato | nucleus | 41.78 | 37.8 |
| Bra007875.1-P | Field mustard | cytosol | 24.8 | 37.4 |
| PGSC0003DMT400001613 | Potato | nucleus | 40.43 | 36.23 |
| KRH74835 | Soybean | nucleus | 34.77 | 33.51 |
| KRH70699 | Soybean | nucleus | 38.01 | 33.25 |
| PGSC0003DMT400067150 | Potato | nucleus, plastid | 28.84 | 32.72 |
| PGSC0003DMT400052203 | Potato | nucleus | 20.22 | 32.33 |
| PGSC0003DMT400055541 | Potato | plastid | 16.71 | 30.85 |
| PGSC0003DMT400090661 | Potato | nucleus | 22.91 | 30.47 |
| PGSC0003DMT400023981 | Potato | nucleus | 29.11 | 27.76 |
| PGSC0003DMT400094424 | Potato | cytosol | 16.71 | 25.31 |
| PGSC0003DMT400064164 | Potato | nucleus | 34.23 | 23.78 |
| PGSC0003DMT400088049 | Potato | cytosol | 16.71 | 22.96 |
| PGSC0003DMT400058534 | Potato | nucleus | 20.22 | 20.05 |
| PGSC0003DMT400062327 | Potato | nucleus | 19.41 | 19.67 |
| PGSC0003DMT400095626 | Potato | plastid | 14.82 | 19.64 |
| PGSC0003DMT400042166 | Potato | cytosol | 22.64 | 18.75 |
Protein Annotations
| EntrezGene:102585454 | MapMan:15.5.19 | ProteinID:ABO93018 | ProteinID:ABO93018.1 | EMBL:EF514213 | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009987 | InterPro:IPR017887 | UniProt:M0ZUZ9 | PFAM:PF03634 | EnsemblPlantsGene:PGSC0003DMG400003382 |
| PGSC:PGSC0003DMG400003382 | EnsemblPlants:PGSC0003DMT400008728 | PFscan:PS51369 | PANTHER:PTHR31072 | PANTHER:PTHR31072:SF70 | InterPro:TF_TCP_subgr |
| InterPro:Transcription_factor_TCP | UniParc:UPI000295A7A1 | RefSeq:XP_006363220.1 | SEG:seg | : | : |
Description
TCP transcription factor [Source:PGSC_GENE;Acc:PGSC0003DMG400003382]
Coordinates
chr5:+:5396420..5397782
Molecular Weight (calculated)
41180.1 Da
IEP (calculated)
7.101
GRAVY (calculated)
-0.995
Length
371 amino acids
Sequence
(BLAST)
(BLAST)
001: MENVHHHHDH DNIGNSIQRP NFPLQLLEKR DQVDHSTICS SQVHPYNSTS LHMMTTSSSD APCVDHNQKS KNQDKKQQAK KPTTTKDRHT KVDGRGRRIR
101: MPATCAARVF QLTRELGHKS DGETIEWLLQ QAEPAVIAAT GTGTIPANYS SLNISLRSSR HHSASNYLAH NNINNFGHVY HDRNYFNGVG LFSSENNSFF
201: PSGNLNMLQA KEELCDDDDD DNDNNNNTGR IKRRSEDQDL LQNNYPMSNM LQSSTYGSIP ASHQIGHIPA TTLYMMTNNN NNSSHHDPNN CSMWGSSSNN
301: NNIENSNIRG GLLNFMNFHQ PILGTRGGGG TAAEGQWGML TAAMNSYRQS GGHASGSSNQ HNGGDDHQHH S
101: MPATCAARVF QLTRELGHKS DGETIEWLLQ QAEPAVIAAT GTGTIPANYS SLNISLRSSR HHSASNYLAH NNINNFGHVY HDRNYFNGVG LFSSENNSFF
201: PSGNLNMLQA KEELCDDDDD DNDNNNNTGR IKRRSEDQDL LQNNYPMSNM LQSSTYGSIP ASHQIGHIPA TTLYMMTNNN NNSSHHDPNN CSMWGSSSNN
301: NNIENSNIRG GLLNFMNFHQ PILGTRGGGG TAAEGQWGML TAAMNSYRQS GGHASGSSNQ HNGGDDHQHH S
001: MDPDPDHNHR PNFPLQLLDS STSSSSTSLA IISTTSEPNS EPKKPPPKRT STKDRHTKVE GRGRRIRMPA MCAARVFQLT RELGHKSDGE TIEWLLQQAE
101: PAVIAATGTG TIPANFTSLN ISLRSSRSSL SAAHLRTTPS SYYFHSPHQS MTHHLQHQHQ VRPKNESHSS SSSSSQLLDH NQMGNYLVQS TAGSLPTSQS
201: PATAPFWSSG DNTQNLWAFN INPHHSGVVA GDVYNPNSGG SGGGSGVHLM NFAAPIALFS GQPLASGYGG GGGGGGEHSH YGVLAALNAA YRPVAETGNH
301: NNNQQNRDGD HHHNHQEDGS TSHHS
101: PAVIAATGTG TIPANFTSLN ISLRSSRSSL SAAHLRTTPS SYYFHSPHQS MTHHLQHQHQ VRPKNESHSS SSSSSQLLDH NQMGNYLVQS TAGSLPTSQS
201: PATAPFWSSG DNTQNLWAFN INPHHSGVVA GDVYNPNSGG SGGGSGVHLM NFAAPIALFS GQPLASGYGG GGGGGGEHSH YGVLAALNAA YRPVAETGNH
301: NNNQQNRDGD HHHNHQEDGS TSHHS
Arabidopsis Description
TCP15TCP15 [Source:UniProtKB/TrEMBL;Acc:A0A178WLV7]
SUBAcon: [plastid,nucleus]
SUBAcon: [plastid,nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.