Factsheet for Bra021603.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
cytosol 2
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra012351.1-P
Bra024548.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G30050.1	Bra012351.1-P	AT1G22920.1	21798944
AT2G30050.1	Bra024548.1-P	AT1G22920.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY29706	Canola	cytosol, plastid	94.36	94.64
Bra022774.1-P	Field mustard	cytosol	40.75	93.69
AT2G30050.1	Thale cress	cytosol	39.16	89.74
Bra039126.1-P	Field mustard	cytosol	36.42	83.44
VIT_14s0066g02380.t01	Wine grape	cytosol	36.13	83.06
VIT_13s0106g00770.t01	Wine grape	cytosol	35.98	82.72
VIT_19s0015g00810.t01	Wine grape	cytosol	35.98	81.64
GSMUA_Achr9P19430_001	Banana	cytosol	35.12	80.46
GSMUA_Achr7P26060_001	Banana	cytosol	34.83	79.8
PGSC0003DMT400003265	Potato	cytosol	34.54	79.14
Solyc02g087300.1.1	Tomato	extracellular, nucleus	34.25	78.48
TraesCS5B01G499200.1	Wheat	cytosol	33.96	77.05
EES00059	Sorghum	cytosol	33.81	76.72
TraesCS3D01G145000.1	Wheat	cytosol	33.81	76.72
Zm00001d039365_P001	Maize	nucleus	33.67	76.39
Zm00001d008932_P001	Maize	extracellular	33.67	76.39
TraesCS5A01G485600.1	Wheat	cytosol	33.67	76.39
HORVU3Hr1G027730.1	Barley	cytosol	33.67	76.39
TraesCS1D01G044700.1	Wheat	cytosol	33.09	76.08
TraesCS1A01G044200.1	Wheat	cytosol	33.53	76.07
Os02t0135800-02	Rice	cytosol	33.53	76.07
TraesCS3B01G162400.1	Wheat	cytosol	33.38	75.99
Bra018343.1-P	Field mustard	cytosol	39.31	74.52
TraesCS1B01G057100.1	Wheat	cytosol	21.24	72.06
OQU89582	Sorghum	cytosol	32.51	69.44
GSMUA_Achr1P22590_001	Banana	plastid	35.98	58.87
GSMUA_Achr8P31110_001	Banana	cytosol	9.68	50.38
Bra027738.1-P	Field mustard	plastid	9.54	20.12

Protein Annotations

Gene3D:1.10.510.10	MapMan:18.4.2.2	Gene3D:2.130.10.10	MapMan:22.4.1.1	EnsemblPlantsGene:Bra021603	EnsemblPlants:Bra021603.1
EnsemblPlants:Bra021603.1-P	InterPro:G-protein_beta_WD-40_rep	GO:GO:0000139	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824
GO:GO:0004672	GO:GO:0005198	GO:GO:0005488	GO:GO:0005515	GO:GO:0005524	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005794	GO:GO:0006464	GO:GO:0006468
GO:GO:0006810	GO:GO:0007154	GO:GO:0007165	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0015031	GO:GO:0016020	GO:GO:0016043	GO:GO:0016192	GO:GO:0016301	GO:GO:0016740
GO:GO:0019538	GO:GO:0030127	GO:GO:0090114	GO:GO:1904263	InterPro:IPR000719	InterPro:IPR001680
InterPro:IPR015943	InterPro:IPR017986	InterPro:Kinase-like_dom_sf	UniProt:M4DYK7	PFAM:PF00069	PFAM:PF00400
PRINTS:PR00320	ScanProsite:PS00107	ScanProsite:PS00108	PFscan:PS50011	PFscan:PS50082	PFscan:PS50294
PANTHER:PTHR11024	PANTHER:PTHR11024:SF2	InterPro:Prot_kinase_dom	InterPro:Protein_kinase_ATP_BS	SMART:SM00220	SMART:SM00320
SUPFAM:SSF50978	SUPFAM:SSF56112	InterPro:Sec13	InterPro:Sec13/Seh1_fam	InterPro:Ser/Thr_kinase_AS	UniParc:UPI000254441E
InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	SEG:seg	:

Description

AT2G30050 (E=7e-170) | transducin family protein / WD-40 repeat family protein

Coordinates

chrA04:+:13351618..13357114

Molecular Weight (calculated)

75431.5 Da

IEP (calculated)

5.034

GRAVY (calculated)

-0.257

Length

692 amino acids

Sequence
(BLAST)

001: MEKQSITNTN TNTSSSSSWI RRSYIGRGCF GTVSKAVSKI DGRVFAVKSV NLAACLPSQS ESLENEIAIL RSLKPHPHIV TFLGDDVSKE GTTSFRNLHL
101: EYLPEGDVAN GGTIVNETLL RRYVWCLVSA LRHVHSNGIV HCDVKSKNVL VADGGSSVKL ADVGSAMALE NPTDEIAPRG SPLWMAPEVV RREYQGPESD
201: VWSLGCTVIE MLTGKPAWED NGFESLSRIG FSNELPFIPV GISELGGDFL EKCLRRDRSQ RWSCDQLLEH PFLRQGHHSF FATESSPRCV LDWVSSEFEE
301: EEESVVSRDT VSAVARISKL TTRGGAIWES DGWIEVRSDN YEKLAAKGEY PVLTRAELQL NVSSVSTDDS VLPSGSEESA SVMTCELMES NMPGQKIETG
401: HEDMVHDVQM DYYGKKVATA SSDCTIKITG VNGGGSQHLA TLTGHRGPVW QVAWAHPKFG SVLASCSYDG QVILWKEGSQ NQWTQAHVFT DHKSSVNSIA
501: WAPYELGLSL ACGSSDGNIS VFTGRGDGGW DAAKIDQAHP VGVTSVSWAP STAPGAIVSS GLLDPVYKIA SGGCDNTVKV WKLSDGLWKM DCFPALQKHS
601: DWVRDVAWAP NLGLPKSTIA SGSQDGKVII WTVGKEGEQW EGKVLKDFMT PVWRVSWSLT GNMLAVSDGN NNVTVWKEAV DGEWEQVTVL EP

Best Arabidopsis Sequence Match ( AT2G30050.1 )
(BLAST)

001: MPGQKIETGH EDIVHDVQMD YYGKRIATAS SDCTIKITGV SNNGGSQQLA TLTGHRGPVW EVAWAHPKYG SILASCSYDG QVILWKEGNQ NQWTQDHVFT
101: DHKSSVNSIA WAPHDIGLSL ACGSSDGNIS VFTARADGGW DTSRIDQAHP VGVTSVSWAP ATAPGALVSS GLLDPVYKLA SGGCDNTVKV WKLANGSWKM
201: DCFPALQKHT DWVRDVAWAP NLGLPKSTIA SGSQDGKVII WTVGKEGEQW EGKVLKDFMT PVWRVSWSLT GNLLAVSDGN NNVTVWKEAV DGEWEQVTAV
301: EP

Arabidopsis Description

SEC13BProtein transport protein SEC13 homolog B [Source:UniProtKB/Swiss-Prot;Acc:O64740]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.