Factsheet for Bra039126.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
endoplasmic reticulum 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra001627.1-P
Bra027175.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G01340.1	Bra001627.1-P	AT3G16300.1	21798944
AT3G01340.1	Bra027175.1-P	AT3G16300.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY37530	Canola	cytosol	99.34	99.34
AT3G01340.1	Thale cress	cytosol	92.72	92.72
Bra022774.1-P	Field mustard	cytosol	86.75	87.04
VIT_14s0066g02380.t01	Wine grape	cytosol	81.13	81.4
VIT_13s0106g00770.t01	Wine grape	cytosol	80.79	81.06
VIT_19s0015g00810.t01	Wine grape	cytosol	80.46	79.67
PGSC0003DMT400003265	Potato	cytosol	79.14	79.14
TraesCS5B01G499200.1	Wheat	cytosol	79.47	78.69
Solyc02g087300.1.1	Tomato	extracellular, nucleus	78.48	78.48
GSMUA_Achr7P26060_001	Banana	cytosol	78.15	78.15
TraesCS5A01G485600.1	Wheat	cytosol	78.81	78.03
TraesCS3D01G145000.1	Wheat	cytosol	78.81	78.03
EES00059	Sorghum	cytosol	78.48	77.7
Os02t0135800-02	Rice	cytosol	78.48	77.7
TraesCS3B01G162400.1	Wheat	cytosol	78.15	77.63
GSMUA_Achr9P19430_001	Banana	cytosol	77.48	77.48
Zm00001d008932_P001	Maize	extracellular	78.15	77.38
Zm00001d039365_P001	Maize	nucleus	78.15	77.38
HORVU3Hr1G027730.1	Barley	cytosol	78.15	77.38
TraesCS1D01G044700.1	Wheat	cytosol	76.82	77.08
TraesCS1A01G044200.1	Wheat	cytosol	77.81	77.05
TraesCS1B01G057100.1	Wheat	cytosol	50.66	75.0
OQU89582	Sorghum	cytosol	76.16	70.99
Bra018343.1-P	Field mustard	cytosol	83.44	69.04
GSMUA_Achr1P22590_001	Banana	plastid	77.15	55.08
GSMUA_Achr8P31110_001	Banana	cytosol	22.19	50.38
Bra021603.1-P	Field mustard	plastid	83.44	36.42
Bra027738.1-P	Field mustard	plastid	22.52	20.73

Protein Annotations

Gene3D:2.130.10.10	MapMan:22.4.1.1	EnsemblPlantsGene:Bra039126	EnsemblPlants:Bra039126.1	EnsemblPlants:Bra039126.1-P	InterPro:G-protein_beta_WD-40_rep
GO:GO:0000139	GO:GO:0003674	GO:GO:0005198	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005794	GO:GO:0005829	GO:GO:0006810
GO:GO:0007154	GO:GO:0007165	GO:GO:0008150	GO:GO:0009987	GO:GO:0015031	GO:GO:0016020
GO:GO:0016043	GO:GO:0016192	GO:GO:0030127	GO:GO:0090114	GO:GO:1904263	InterPro:IPR001680
InterPro:IPR015943	InterPro:IPR017986	UniProt:M4FDF5	PFAM:PF00400	PRINTS:PR00320	PFscan:PS50082
PFscan:PS50294	PANTHER:PTHR11024	PANTHER:PTHR11024:SF2	SMART:SM00320	SUPFAM:SSF50978	InterPro:Sec13
InterPro:Sec13/Seh1_fam	UniParc:UPI000254776C	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf

Description

AT3G01340 (E=4e-173) | protein transport protein SEC13 family protein / WD-40 repeat family protein

Coordinates

chrA05:-:23840935..23841843

Molecular Weight (calculated)

32726.2 Da

IEP (calculated)

5.937

GRAVY (calculated)

-0.289

Length

302 amino acids

Sequence
(BLAST)

001: MPPQKIETGH SDIVHDVVMD YYGKRIATAS SDGTIKITGV SNSGGSQQLA TLTGHRGPVW QVAWAHPKYD SLLASCSYDG QIIIWKEGNN NEWTQSHVFT
101: DHKVSVNSIA WAPHELGLSL ACGASDGNIS VFSARADGGW DTTKIDQAHP VGVTSVSWAP ATEPGALVSS GMHEPVYKLA SGGCDSTVKV WKFANGSWKM
201: DCFPALHKHK DWVRDVAWAP NLGLPKSTIA SGSEDGSVII WTVGKEGEQW EGKVLKDFKT PVWRVTWSMT GNLLAVSDGN NNVTVWKEAV DGEWEQVTVV
301: EP

Best Arabidopsis Sequence Match ( AT3G01340.1 )
(BLAST)

001: MPPQKIETGH SDTIHDVVMD YYGKRVATAS SDCTIKITGV SNSGGSQHLA TLTGHRGPVW QVAWAHPKFG SLLASCSYDG QIILWKEGNQ NQWTQAHVFT
101: DHKVSVNSIA WAPHELGLSL ACGASDGNIS VFSARADGGW DTTKIDQAHP VGVTSVSWAP ATEPGALVSS GMIDPVYKLA SGGCDSTVKV WKFSNGSWKM
201: DCFPALNKHT DWVRDVAWAP NLGLPKSTIA SGSEDGKVII WTIGKEGEQW EGTVLKDFKT PVWRVSWSLT GNLLAVSDGN NNVTVWKESV DGEWEQVTVV
301: EP

Arabidopsis Description

SEC13AProtein transport protein SEC13 homolog A [Source:UniProtKB/Swiss-Prot;Acc:Q9SRI1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.