Factsheet for GSMUA_Achr1P22590_001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
endoplasmic reticulum 1
mitochondrion 1
cytosol 2
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_Achr4P08280_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G30050.1	GSMUA_Achr10P...	AT1G22920.1	21798944
AT3G01340.1	GSMUA_Achr4P08280_001	AT3G16300.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr9P19430_001	Banana	cytosol	65.01	91.06
GSMUA_Achr7P26060_001	Banana	cytosol	63.36	88.74
VIT_14s0066g02380.t01	Wine grape	cytosol	60.99	85.71
VIT_13s0106g00770.t01	Wine grape	cytosol	60.52	85.05
KRH46249	Soybean	endoplasmic reticulum, nucleus	60.52	85.05
KRH46229	Soybean	cytosol	60.52	85.05
KRG98707	Soybean	endoplasmic reticulum, nucleus	60.05	84.39
KRG98686	Soybean	endoplasmic reticulum, nucleus	59.81	84.05
TraesCS5B01G499200.1	Wheat	cytosol	60.52	83.93
EES00059	Sorghum	cytosol	60.52	83.93
Zm00001d039365_P001	Maize	nucleus	60.28	83.61
Zm00001d008932_P001	Maize	extracellular	60.28	83.61
VIT_19s0015g00810.t01	Wine grape	cytosol	60.05	83.28
TraesCS3D01G145000.1	Wheat	cytosol	60.05	83.28
Os02t0135800-02	Rice	cytosol	60.05	83.28
TraesCS5A01G485600.1	Wheat	cytosol	59.81	82.95
HORVU3Hr1G027730.1	Barley	cytosol	59.81	82.95
TraesCS1D01G044700.1	Wheat	cytosol	58.63	82.39
TraesCS1A01G044200.1	Wheat	cytosol	59.34	82.3
PGSC0003DMT400003265	Potato	cytosol	58.63	82.12
TraesCS1B01G057100.1	Wheat	cytosol	39.48	81.86
Solyc02g087300.1.1	Tomato	extracellular, nucleus	58.39	81.79
TraesCS3B01G162400.1	Wheat	cytosol	58.63	81.58
CDY24035	Canola	cytosol	57.45	80.73
CDY02025	Canola	cytosol	57.68	80.53
Bra022774.1-P	Field mustard	cytosol	57.21	80.4
CDX84863	Canola	cytosol	57.21	80.4
CDX97854	Canola	cytosol	56.5	79.4
AT2G30050.1	Thale cress	cytosol	56.5	79.14
PGSC0003DMT400006490	Potato	cytosol	55.79	78.41
Solyc03g120900.1.1	Tomato	cytosol	55.32	77.74
CDY37530	Canola	cytosol	55.32	77.48
AT3G01340.1	Thale cress	cytosol	55.32	77.48
OQU89582	Sorghum	cytosol	59.1	77.16
Bra039126.1-P	Field mustard	cytosol	55.08	77.15
CDY49046	Canola	cytosol	55.08	77.15
CDY10705	Canola	cytosol	57.21	66.3
Bra018343.1-P	Field mustard	cytosol	57.21	66.3
GSMUA_Achr8P31110_001	Banana	cytosol	19.15	60.9
Bra021603.1-P	Field mustard	plastid	58.87	35.98
CDY29706	Canola	cytosol, plastid	58.39	35.8
GSMUA_Achr2P06320_001	Banana	cytosol	18.68	23.94

Protein Annotations

Gene3D:2.130.10.10	MapMan:22.4.1.1	InterPro:G-protein_beta_WD-40_rep	GO:GO:0000139	GO:GO:0003674	GO:GO:0005198
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005794	GO:GO:0006810	GO:GO:0007154	GO:GO:0007165	GO:GO:0008150	GO:GO:0009987
GO:GO:0015031	GO:GO:0016020	GO:GO:0016043	GO:GO:0016192	GO:GO:0030127	GO:GO:0090114
GO:GO:1904263	EnsemblPlantsGene:GSMUA_Achr1G22590_001	EnsemblPlants:GSMUA_Achr1P22590_001	EnsemblPlants:GSMUA_Achr1T22590_001	InterPro:IPR001680	InterPro:IPR015943
InterPro:IPR017986	UniProt:M0S267	PFAM:PF00400	PRINTS:PR00320	PFscan:PS50082	PFscan:PS50294
PANTHER:PTHR11024	PANTHER:PTHR11024:SF2	SMART:SM00320	SUPFAM:SSF50978	InterPro:Sec13	InterPro:Sec13/Seh1_fam
UniParc:UPI000295DC06	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	SEG:seg

Description

Putative Protein SEC13 homolog [Source:GMGC_GENE;Acc:GSMUA_Achr1G22590_001]

Coordinates

chr1:+:17020565..17023504

Molecular Weight (calculated)

46503.8 Da

IEP (calculated)

8.666

GRAVY (calculated)

-0.403

Length

423 amino acids

Sequence
(BLAST)

001: MYRSGSGCFF SSPASASIRA SPRNIYRKRG LIPENERPIH SIPKPKETSA LSRPLLSGRR RRRHLSSFSP LKKFFEAFLC SPNQNLQEKY RTGTMPSQKI
101: ETGHQDVVHD VAMDYYGKRL ATASSDMTIK IVGVSGSSHQ HLATLSGHHG PVWQVAWAHP KFGSMIASCS YDGRVIIWKE GSKPDEWIQA HVFTEHKSSV
201: NSIAWAPHEL GLCLACGSSD GNISVFTART DGGWDTTRID QAHPVGVTSV TWAPALAPGV LVGSGQLDPV QKLASGGCDN TVKVWKFYNG NWKMDCFPAL
301: QMHSDWVRDV AWAPNLGLPK STIASASQDG TVVIWTVAKE GDQWEGKVLN NFNAPVWRVS WSLTGNILAV ADGNNNVTLW KEAVDGENKH EITNFEGIHA
401: IHKKVGTDQQ ENSRNHVALT DGE

Best Arabidopsis Sequence Match ( AT2G30050.1 )
(BLAST)

001: MPGQKIETGH EDIVHDVQMD YYGKRIATAS SDCTIKITGV SNNGGSQQLA TLTGHRGPVW EVAWAHPKYG SILASCSYDG QVILWKEGNQ NQWTQDHVFT
101: DHKSSVNSIA WAPHDIGLSL ACGSSDGNIS VFTARADGGW DTSRIDQAHP VGVTSVSWAP ATAPGALVSS GLLDPVYKLA SGGCDNTVKV WKLANGSWKM
201: DCFPALQKHT DWVRDVAWAP NLGLPKSTIA SGSQDGKVII WTVGKEGEQW EGKVLKDFMT PVWRVSWSLT GNLLAVSDGN NNVTVWKEAV DGEWEQVTAV
301: EP

Arabidopsis Description

SEC13BProtein transport protein SEC13 homolog B [Source:UniProtKB/Swiss-Prot;Acc:O64740]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.