Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY24035 | Canola | cytosol | 94.04 | 94.35 |
| Bra022774.1-P | Field mustard | cytosol | 93.71 | 94.02 |
| CDX84863 | Canola | cytosol | 93.71 | 94.02 |
| CDY02025 | Canola | cytosol | 92.05 | 91.75 |
| CDX97854 | Canola | cytosol | 90.07 | 90.37 |
| AT3G01340.1 | Thale cress | cytosol | 89.07 | 89.07 |
| VIT_14s0066g02380.t01 | Wine grape | cytosol | 84.77 | 85.05 |
| VIT_13s0106g00770.t01 | Wine grape | cytosol | 84.44 | 84.72 |
| VIT_19s0015g00810.t01 | Wine grape | cytosol | 84.44 | 83.61 |
| PGSC0003DMT400003265 | Potato | cytosol | 81.79 | 81.79 |
| Solyc02g087300.1.1 | Tomato | extracellular, nucleus | 81.13 | 81.13 |
| GSMUA_Achr9P19430_001 | Banana | cytosol | 80.46 | 80.46 |
| GSMUA_Achr7P26060_001 | Banana | cytosol | 80.13 | 80.13 |
| TraesCS5B01G499200.1 | Wheat | cytosol | 80.79 | 80.0 |
| TraesCS5A01G485600.1 | Wheat | cytosol | 80.46 | 79.67 |
| TraesCS3D01G145000.1 | Wheat | cytosol | 80.46 | 79.67 |
| EES00059 | Sorghum | cytosol | 80.13 | 79.34 |
| Os02t0135800-02 | Rice | cytosol | 80.13 | 79.34 |
| HORVU3Hr1G027730.1 | Barley | cytosol | 79.8 | 79.02 |
| Zm00001d008932_P001 | Maize | extracellular | 79.47 | 78.69 |
| TraesCS3B01G162400.1 | Wheat | cytosol | 79.14 | 78.62 |
| TraesCS1D01G044700.1 | Wheat | cytosol | 78.15 | 78.41 |
| TraesCS1A01G044200.1 | Wheat | cytosol | 79.14 | 78.36 |
| Zm00001d039365_P001 | Maize | nucleus | 79.14 | 78.36 |
| TraesCS1B01G057100.1 | Wheat | cytosol | 50.66 | 75.0 |
| CDY10705 | Canola | cytosol | 90.07 | 74.52 |
| Bra018343.1-P | Field mustard | cytosol | 90.07 | 74.52 |
| OQU89582 | Sorghum | cytosol | 77.15 | 71.91 |
| GSMUA_Achr1P22590_001 | Banana | plastid | 79.14 | 56.5 |
| GSMUA_Achr8P31110_001 | Banana | cytosol | 21.85 | 49.62 |
| CDY29706 | Canola | cytosol, plastid | 90.07 | 39.42 |
| Bra021603.1-P | Field mustard | plastid | 89.74 | 39.16 |
| AT1G64350.1 | Thale cress | plastid | 20.53 | 19.02 |
Protein Annotations
| Gene3D:2.130.10.10 | MapMan:22.4.1.1 | EntrezGene:817556 | UniProt:A0A178VM64 | ProteinID:AAC16967.1 | ProteinID:AAM14986.1 |
| ProteinID:AEC08339.1 | EMBL:AF412112 | ArrayExpress:AT2G30050 | EnsemblPlantsGene:AT2G30050 | RefSeq:AT2G30050 | TAIR:AT2G30050 |
| RefSeq:AT2G30050-TAIR-G | EnsemblPlants:AT2G30050.1 | TAIR:AT2G30050.1 | EMBL:AY087553 | EMBL:AY124848 | Unigene:At.25577 |
| InterPro:G-protein_beta_WD-40_rep | GO:GO:0000139 | GO:GO:0003674 | GO:GO:0005198 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005635 | GO:GO:0005643 |
| GO:GO:0005730 | GO:GO:0005737 | GO:GO:0005783 | GO:GO:0005794 | GO:GO:0006810 | GO:GO:0007154 |
| GO:GO:0007165 | GO:GO:0008150 | GO:GO:0009987 | GO:GO:0015031 | GO:GO:0016020 | GO:GO:0016043 |
| GO:GO:0016192 | GO:GO:0030127 | GO:GO:0051028 | GO:GO:0090114 | GO:GO:1904263 | InterPro:IPR001680 |
| InterPro:IPR015943 | InterPro:IPR017986 | RefSeq:NP_180566.1 | UniProt:O64740 | ProteinID:OAP07429.1 | PFAM:PF00400 |
| PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000084 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001016 |
| PO:PO:0001017 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 |
| PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 |
| PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 |
| PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 |
| PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 |
| PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025195 | PO:PO:0025281 | PRINTS:PR00320 | PFscan:PS50082 |
| PFscan:PS50294 | PANTHER:PTHR11024 | PANTHER:PTHR11024:SF2 | SMART:SM00320 | SUPFAM:SSF50978 | InterPro:Sec13 |
| InterPro:Sec13/Seh1_fam | UniParc:UPI000009C654 | InterPro:WD40/YVTN_repeat-like_dom_sf | InterPro:WD40_repeat | InterPro:WD40_repeat_dom | InterPro:WD40_repeat_dom_sf |
Description
SEC13BProtein transport protein SEC13 homolog B [Source:UniProtKB/Swiss-Prot;Acc:O64740]
Coordinates
chr2:+:12824372..12826684
Molecular Weight (calculated)
32644.1 Da
IEP (calculated)
5.532
GRAVY (calculated)
-0.285
Length
302 amino acids
Sequence
(BLAST)
(BLAST)
001: MPGQKIETGH EDIVHDVQMD YYGKRIATAS SDCTIKITGV SNNGGSQQLA TLTGHRGPVW EVAWAHPKYG SILASCSYDG QVILWKEGNQ NQWTQDHVFT
101: DHKSSVNSIA WAPHDIGLSL ACGSSDGNIS VFTARADGGW DTSRIDQAHP VGVTSVSWAP ATAPGALVSS GLLDPVYKLA SGGCDNTVKV WKLANGSWKM
201: DCFPALQKHT DWVRDVAWAP NLGLPKSTIA SGSQDGKVII WTVGKEGEQW EGKVLKDFMT PVWRVSWSLT GNLLAVSDGN NNVTVWKEAV DGEWEQVTAV
301: EP
101: DHKSSVNSIA WAPHDIGLSL ACGSSDGNIS VFTARADGGW DTSRIDQAHP VGVTSVSWAP ATAPGALVSS GLLDPVYKLA SGGCDNTVKV WKLANGSWKM
201: DCFPALQKHT DWVRDVAWAP NLGLPKSTIA SGSQDGKVII WTVGKEGEQW EGKVLKDFMT PVWRVSWSLT GNLLAVSDGN NNVTVWKEAV DGEWEQVTAV
301: EP
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.