CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

nucleus 1
plastid 4
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, plastid
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	cytosol
PProwler:	plastid
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDY04768
CDY21400
CDY25761

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G30050.1	CDY04768	AT1G22920.1	21798944
AT2G30050.1	CDY21400	AT1G22920.1	21798944
AT2G30050.1	CDY25761	AT1G22920.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX97854	Canola	cytosol	42.32	97.01
Bra021603.1-P	Field mustard	plastid	94.64	94.36
CDX84863	Canola	cytosol	40.87	93.69
CDY24035	Canola	cytosol	40.87	93.69
CDY02025	Canola	cytosol	40.29	91.75
AT2G30050.1	Thale cress	cytosol	39.42	90.07
CDY49046	Canola	cytosol	36.81	84.11
CDY37530	Canola	cytosol	36.52	83.44
VIT_14s0066g02380.t01	Wine grape	cytosol	36.38	83.39
VIT_13s0106g00770.t01	Wine grape	cytosol	36.23	83.06
VIT_19s0015g00810.t01	Wine grape	cytosol	36.23	81.97
GSMUA_Achr9P19430_001	Banana	cytosol	35.07	80.13
GSMUA_Achr7P26060_001	Banana	cytosol	34.93	79.8
PGSC0003DMT400003265	Potato	cytosol	34.78	79.47
Solyc02g087300.1.1	Tomato	extracellular, nucleus	34.49	78.81
TraesCS5B01G499200.1	Wheat	cytosol	34.06	77.05
EES00059	Sorghum	cytosol	33.91	76.72
TraesCS3D01G145000.1	Wheat	cytosol	33.91	76.72
Zm00001d008932_P001	Maize	extracellular	33.77	76.39
Zm00001d039365_P001	Maize	nucleus	33.77	76.39
TraesCS5A01G485600.1	Wheat	cytosol	33.77	76.39
HORVU3Hr1G027730.1	Barley	cytosol	33.77	76.39
TraesCS1D01G044700.1	Wheat	cytosol	33.19	76.08
TraesCS1A01G044200.1	Wheat	cytosol	33.62	76.07
Os02t0135800-02	Rice	cytosol	33.62	76.07
TraesCS3B01G162400.1	Wheat	cytosol	33.48	75.99
CDY10705	Canola	cytosol	39.42	74.52
TraesCS1B01G057100.1	Wheat	cytosol	21.3	72.06
OQU89582	Sorghum	cytosol	32.61	69.44
GSMUA_Achr1P22590_001	Banana	plastid	35.8	58.39
GSMUA_Achr8P31110_001	Banana	cytosol	9.57	49.62
CDY08370	Canola	plastid	9.57	20.12
CDY47852	Canola	cytosol	9.42	17.91

Protein Annotations

Gene3D:1.10.510.10	MapMan:18.4.2.2	Gene3D:2.130.10.10	MapMan:22.4.1.1	GO:A0A078GW24	UniProt:A0A078GW24
EnsemblPlants:CDY29706	ProteinID:CDY29706	ProteinID:CDY29706.1	InterPro:G-protein_beta_WD-40_rep	GO:GO:0000139	GO:GO:0000166
GO:GO:0003674	GO:GO:0003824	GO:GO:0004672	GO:GO:0005198	GO:GO:0005488	GO:GO:0005515
GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005794
GO:GO:0006464	GO:GO:0006468	GO:GO:0006810	GO:GO:0007154	GO:GO:0007165	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0015031	GO:GO:0016020	GO:GO:0016043	GO:GO:0016192
GO:GO:0016301	GO:GO:0016740	GO:GO:0019538	GO:GO:0030127	GO:GO:0090114	GO:GO:1904263
EnsemblPlantsGene:GSBRNA2T00043488001	InterPro:IPR000719	InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986	InterPro:Kinase-like_dom_sf
PFAM:PF00069	PFAM:PF00400	PRINTS:PR00320	ScanProsite:PS00107	ScanProsite:PS00108	PFscan:PS50011
PFscan:PS50082	PFscan:PS50294	PANTHER:PTHR11024	PANTHER:PTHR11024:SF2	InterPro:Prot_kinase_dom	InterPro:Protein_kinase_ATP_BS
SMART:SM00220	SMART:SM00320	SUPFAM:SSF50978	SUPFAM:SSF56112	InterPro:Sec13	InterPro:Sec13/Seh1_fam
InterPro:Ser/Thr_kinase_AS	UniParc:UPI0004EE9175	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf
SEG:seg	:	:	:	:	:

Description

BnaA04g17210DBnaA04g17210D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GW24]

Coordinates

chrLK032241:-:454714..460027

Molecular Weight (calculated)

75109.9 Da

IEP (calculated)

4.775

GRAVY (calculated)

-0.267

Length

690 amino acids

Sequence
(BLAST)

001: MEKQSITNTN TSSSSSWIRG SYIGRGCFGT VSKAVSKLDG GVFAVKSVDL AACLPSQSES LENEITILRS LKPHPHIVTF LGDDASKEGT TSFRNLHLEY
101: LPEGDVAKGG TIVNETLLRR YVWCLVSALR HVHSNGIVHC DVKAKNVLVA DGGSSVKLAD FGSAMALENP TDEIAPRGSP LWMAPEVVRR EYQGPESDVW
201: SLGCTVIEML TGKPAWEDNG FESLSRIGFS NELPFFPAGI SELGGDFLEK CLRRDRSQRW SCDQLLEHPF VREGQHSLFT TESSPRCVLD WVSSEFEEEE
301: ESDVSRDTVS AMARISNLVT RRGAIWESNG WIEVRSDASE ELAAKWEYSV SARAELQLNV SSVSTDDSVS PSGSEESASV MTCELMESNM PGQKIETGHE
401: DMVHDVQMDY YGKKVATASS DCTIKITGVN GGGSQHLATL TGHRGPVWQV AWAHPKFGSI LASCSYDGQV ILWKEGSQNQ WTQAHVFTDH KSSVNSIAWA
501: PYELGLSLAC GSSDGNISVF TGRGDGGWDA AKIDQAHPVG VTSVSWAPST APGAIVSSGL LDPVYKIASG GCDNTVKVWK LSDGLWKMDC FPALQKHSDW
601: VRDVAWAPNL GLPKSTIASG SQDGKVIIWT VGKEGEQWEG KVLKDFMTPV WRVSWSLTGN MLAVSDGNNN VTVWKEAVDG EWEQVTVLEP

Best Arabidopsis Sequence Match ( AT2G30050.1 )
(BLAST)

001: MPGQKIETGH EDIVHDVQMD YYGKRIATAS SDCTIKITGV SNNGGSQQLA TLTGHRGPVW EVAWAHPKYG SILASCSYDG QVILWKEGNQ NQWTQDHVFT
101: DHKSSVNSIA WAPHDIGLSL ACGSSDGNIS VFTARADGGW DTSRIDQAHP VGVTSVSWAP ATAPGALVSS GLLDPVYKLA SGGCDNTVKV WKLANGSWKM
201: DCFPALQKHT DWVRDVAWAP NLGLPKSTIA SGSQDGKVII WTVGKEGEQW EGKVLKDFMT PVWRVSWSLT GNLLAVSDGN NNVTVWKEAV DGEWEQVTAV
301: EP

Arabidopsis Description

SEC13BProtein transport protein SEC13 homolog B [Source:UniProtKB/Swiss-Prot;Acc:O64740]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.