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Field mustard
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Field mustard
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 5
  • mitochondrion 1
  • peroxisome 1
Predictors GFP MS/MS Papers
Winner Takes All:nucleus
Any Predictor:mitochondrion, nucleus, peroxisome
BaCelLo:nucleus
MultiLoc:nucleus
Plant-mPloc:nucleus
PProwler:mitochondrion
PTS1:peroxisome
WoLF PSORT:nucleus
YLoc:nucleus
PPI

Inferred distinct locusB in Crop

locusBlocations
Bra002274.1-P
Bra002404.1-P
Bra002709.1-P
Bra004720.1-P
Bra006620.1-P
Bra012351.1-P
Bra020075.1-P
Bra020425.1-P
Bra020748.1-P
Bra024548.1-P
Bra027190.1-P
Bra028057.1-P
Bra028059.1-P
Bra031892.1-P
Bra036754.1-P
Bra037032.1-P
Bra038059.1-P

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT1G52240.1 Bra012351.1-P AT1G22920.1 21798944
AT1G52240.1 Bra024548.1-P AT1G22920.1 21798944
AT1G52240.1 Bra028057.1-P AT1G34430.1 21798944
AT1G52240.1 Bra028059.1-P AT1G34570.1 21798944
AT1G52240.1 Bra036754.1-P AT1G34570.1 21798944
AT1G52240.1 Bra004720.1-P AT2G42790.1 21798944
AT1G52240.1 Bra020748.1-P AT3G06430.1 21798944
AT1G52240.1 Bra027190.1-P AT3G16120.1 21798944
AT1G52240.1 Bra038059.1-P AT4G15930.1 21798944
AT1G52240.1 Bra037032.1-P AT4G32960.1 21798944
AT1G52240.1 Bra002274.1-P AT5G19920.1 21798944
AT1G52240.1 Bra020075.1-P AT5G19920.1 21798944
AT1G52240.1 Bra002404.1-P AT5G22310.1 21798944
AT1G52240.1 Bra006620.1-P AT5G22310.1 21798944
AT1G52240.1 Bra002709.1-P AT5G57660.1 21798944
AT1G52240.1 Bra020425.1-P AT5G57660.1 21798944
AT1G52240.1 Bra031892.1-P AT5G64960.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY45633 Canola nucleus 97.39 100.0
CDX87879 Canola nucleus 97.21 93.72
Bra018956.1-P Field mustard nucleus 89.01 89.18
AT1G52240.1 Thale cress nucleus 88.64 87.66
Bra021162.1-P Field mustard nucleus 54.93 67.97
Bra027189.1-P Field mustard nucleus 62.57 63.4
Bra003536.1-P Field mustard nucleus 58.47 61.21
Zm00001d012691_P001 Maize cytosol, extracellular, mitochondrion, plastid 28.86 54.01
Bra036671.1-P Field mustard cytosol, mitochondrion, nucleus, plastid 50.65 53.86
HORVU3Hr1G073200.1 Barley nucleus 47.67 53.78
Bra015068.1-P Field mustard nucleus 52.14 53.74
TraesCS3D01G296400.1 Wheat cytosol 46.18 53.68
TraesCS3B01G331000.1 Wheat nucleus 46.37 53.55
Bra013249.1-P Field mustard nucleus, plastid 51.58 53.47
TraesCS3A01G305500.1 Wheat cytosol, mitochondrion, nucleus, plastid 45.44 51.91
Os01t0760300-01 Rice plasma membrane 49.91 51.44
Bra020048.1-P Field mustard nucleus 46.93 51.01
Bra006510.1-P Field mustard cytosol 46.0 50.61
TraesCS3B01G304200.1 Wheat plastid 48.23 50.19
TraesCS3D01G270200.1 Wheat plastid 48.42 50.19
OQU87589 Sorghum nucleus 48.23 50.1
Zm00001d043383_P001 Maize nucleus 48.6 49.9
Zm00001d038989_P002 Maize nucleus, plastid 46.37 48.82
EES19937 Sorghum mitochondrion 48.6 47.45
KXG33101 Sorghum mitochondrion 49.35 47.41
Bra002246.1-P Field mustard plastid 45.44 47.2
Os05t0560100-01 Rice mitochondrion 49.91 47.1
TraesCS1B01G420200.1 Wheat nucleus, plastid 49.53 47.08
Os01t0675000-01 Rice mitochondrion 48.42 46.93
TraesCS1D01G400200.2 Wheat plastid 49.35 46.9
TraesCS1A01G392100.1 Wheat plastid 48.98 46.88
Zm00001d009549_P002 Maize mitochondrion 46.55 45.29
Zm00001d043889_P001 Maize mitochondrion 47.86 42.48
HORVU3Hr1G062030.1 Barley nucleus, plastid 48.42 41.87
TraesCS3A01G270400.1 Wheat plastid 48.6 41.49
Bra004945.1-P Field mustard nucleus, plastid 33.33 38.91
Bra037342.1-P Field mustard cytosol 34.45 38.78
Bra000971.1-P Field mustard nucleus 34.26 38.49
HORVU1Hr1G086590.2 Barley plastid 48.23 38.43
Bra015010.1-P Field mustard cytosol 38.17 37.48
Bra009621.1-P Field mustard nucleus 38.73 37.14
Bra009152.1-P Field mustard cytosol, plastid 39.48 35.63
Bra007183.1-P Field mustard cytosol, plastid 35.94 33.8
Bra005323.1-P Field mustard nucleus 28.49 30.54
Bra005322.1-P Field mustard nucleus 19.93 27.3
Bra021161.1-P Field mustard nucleus 5.59 22.56
Protein Annotations
EnsemblPlants:Bra030396.1EnsemblPlants:Bra030396.1-PEnsemblPlantsGene:Bra030396Gene3D:1.20.58.2010GO:GO:0003674GO:GO:0005085
GO:GO:0005089GO:GO:0005488GO:GO:0005515GO:GO:0008150GO:GO:0065009InterPro:IPR005512
InterPro:PRONE_domInterPro:RopGEFPANTHER:PTHR33101PANTHER:PTHR33101:SF10PFAM:PF03759PFscan:PS51334
SEG:segUniParc:UPI00025478FDUniProt:M4ENM6MapMan:27.4.3.1::
Description
AT1G52240 (E=4e-252) ATROPGEF11, ROPGEF11 | ROPGEF11 (RHO GUANYL-NUCLEOTIDE EXCHANGE FACTOR 11); Rho guanyl-nucleotide exchange factor
Coordinates
chrA05:+:10855878..10857882
Molecular Weight (calculated)
60579.0 Da
IEP (calculated)
5.506
GRAVY (calculated)
-0.609
Length
537 amino acids
Sequence
(BLAST)
001: MEQEQESYKS RLFHFKNMSE HSASRHVKSW SSDCAMKIDG SDSFDDDDND LMFRSQPGNF GSVERPPLPS SGDATPNRSD KIGTPRMVSS ESMEAQLQAA
101: MEQMKERFSK LLLGEDMSGG GKGVSSALAL SNAITNLAAS AFGEQRRLEP MPADRKARWR RELGWLISVA DHIVEFAPTQ QTNKDGSSME VMTTRQRTDL
201: LCNVPALKKL DAMLLDCLDK FKDQNEFYYV KKDSPDSSET RNDEKWWLPA VKVPPNGLSE MSRRFLQSQK ECVNQVLKAA MAINAQVLSE MEIPESYLES
301: LPKNGRASLG DVIYKMITVE MFDADQFLIE MDLSSEHKIL DLKNKIEASI VIWKRKMVQK DTKSPWGSGV STEKREQFEE RAETILLLLK QGFPGISQSS
401: LDISKIQCNR DVGLAILEGY SRVLESLAHT VMSKIEDVLY ADQLTQEPTN APSKNRYLVK ETMKEERLSF SEDTATGTSL SDVMQWGNKN NEVKKESYYG
501: DREKPLLSKV TGLMTTNKKS SYLETIGVMR SPTARYS
Best Arabidopsis Sequence Match ( AT1G52240.1 )
(BLAST)
001: MVKAMEQEQE TYKSRLFHFK NMNENSASRH VKSWSSDCAM RMDGSDNLDD DDNDMMMFRS QPGKCGSVDR PSLPIGGVTP NRNDKLPRVS SSDSMEALII
101: LQAAMEQMKE KFSKLLLGED MSGGGKGVSS ALALSNAITN LAASAFGEQR RLEPMAVDRK TRWRREIGWL ISVADYIVEF APTQQTNKDG TSMEVMSTRQ
201: RTDLLCNIPA LKKLDAMLLD CLDKFKDQDE FYYVKKDSPD SCETRNDEKW WLPAVKVPPN GLSEISRRFL QSQKECVNQV LKAAMAINAQ VLSEMEIPES
301: YLESLPKNGR ASLGDVIYRM ITVEMFDADQ FLIEMDLSSE HKILDLKNRI EASIVIWKRK MVQKDTKSPW GSTVSIEKRE QFEERAETIL LLLKQGFPGI
401: SQSSLDISKI QFNRDVGLAI LESYSRVLES LAHTVMSRIE DVLYADQLTQ EPTNNAPSKN RYSLKENEKL REERLSFTED MASGTLSDVM QWGNKNNEMK
501: KESFFGDREK PLLSKVTGIM TNNKKSSYLD NLGAMRSPTA RYS
Arabidopsis Description
ROPGEF11ROPGEF11 [Source:UniProtKB/TrEMBL;Acc:A0A178W8V0]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.