Factsheet for Bra002274.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra002274.1-P
Bra003362.1-P
Bra020075.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G19920.1	Bra003362.1-P	AT3G59050.1	21798944
AT5G19920.1	Bra002274.1-P	AT5G19920.1	21798944
AT5G19920.1	Bra020075.1-P	AT5G19920.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX92489	Canola	cytosol	94.41	88.24
Bra020075.1-P	Field mustard	nucleus	68.01	66.72
AT5G19920.1	Thale cress	nucleus	69.06	60.21
Bra022749.1-P	Field mustard	nucleus	40.03	42.02
Bra002273.1-P	Field mustard	nucleus	5.24	15.15

Protein Annotations

Gene3D:2.130.10.10	MapMan:35.2	EnsemblPlantsGene:Bra002274	EnsemblPlants:Bra002274.1	EnsemblPlants:Bra002274.1-P	ncoils:Coil
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0007154	GO:GO:0007165	GO:GO:0008150
GO:GO:0009987	GO:GO:0032008	InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986	UniProt:M4CDJ3
PFAM:PF00400	PFscan:PS50082	PFscan:PS50294	PANTHER:PTHR22850	PANTHER:PTHR22850:SF131	SMART:SM00320
SUPFAM:SSF50978	UniParc:UPI0002544DED	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf
InterPro:WDR24	SEG:seg	:	:	:	:

Description

AT5G19920 (E=9e-189) | transducin family protein / WD-40 repeat family protein

Coordinates

chrA10:+:10554377..10556977

Molecular Weight (calculated)

64616.5 Da

IEP (calculated)

9.147

GRAVY (calculated)

-0.652

Length

572 amino acids

Sequence
(BLAST)

001: MAAMKKPKVE QGEEANTLST QIPDDKEGLI DFMDQRANSI EALKDQLSNL ERKLSEERRL MADAEAKFLR VDRVENKKNV PGKTGSLLGI AEFWTERDNN
101: VKKTANNGTS TPHPRGEKIE YESSTPQTPT EIKPLKMPSI ILPPSFKRKA SAPARPEANE TQHVATSESN VPKEVRNGSE AKRSRTVVPN EVVRESQSQA
201: KPRIRVSTNI PGQAAQQEKS EFHGHEELIA LIGRSSLRAT IESRTLAMIP SGHTKRMRSL ALSPSNRDLF ATSALDGVVH FWKLQSDRSS ATLFKTVNRV
301: EVDQKRWAED IAWHPHNSAL FSVYTADEGH AQISALYLNE ARETCESKFL KDRPHSKGLI NRIMFTPWDD PCFITGGCDH AVVLWREQCE SNEWKSRLLH
401: KDLHTSAVMG VAGMRHNNLV LSCGDDRRFV GFDAREEKVT FKHRLDNKCT NLLPNPRDVN LVMLQTRQLD RQLRLYDVRL PQTELFSFGW KQESSESQSA
501: LINQSWSPDG LHISSGSSDP AIHIFDIRYN AASPSLSIKA HKKRVFKAEW HSSNQLLVSI SSDLEIGIHK LW

Best Arabidopsis Sequence Match ( AT5G19920.1 )
(BLAST)

001: MATTAMNKPK IEQGEEVEVE AEARTFSTQI PDDREALLEF MDQRAKSIQR LKDQISSLDR KLAEERKLMA DAEAKFLQID RVGNGIFSKS KPKAPGKTGS
101: ILGIAEFWNE GNKTKTANEN STPQSPSEME SLKLPSIILP PSFKRRASAT VRAEVNETTQ AQPMATRDYN IPREDTCGPE AKRPRSIPDE VVRETQDRDK
201: ETQPMATRGY DVPKEDKSGP EARRLRSIPD EVVRESQGRD NAAQPMATRD SNVPKEDKSG LDKRSRSIPN EVAQAPDNHT NKDLAKPRIR VSSNISQQGQ
301: QEKSEFRGHD ELIALIGRSS LRPTIEGRTA GMLPSCHTKR MRSLALSPSN RELFATSALD GAVHFWKLQS DRSTATLFKT VNRVAVDQKK WAEDIAWHPH
401: KNALFSVYTA DDGHPQISAI YLNEAGERCE SQFMEDRPHS KGLINRIMFT PWDDPCFITG GSDHAVVLWR DQCENNAWKP TLLHRDLHSS AVMGVTGMRH
501: NNHVLSCGDD RRFVGFDARE EKVTFKHRLD NRCTNIMPNP RDVNLVMVNT RQLDRQLRLY DVRLPQTELF SFGWKQESSE SQSALINQSW SPDGLHISSG
601: SADPVIHIFD IRYNAPSPSL SMKAHKKRVF KAEWHSSYPL LVSISSDLAI GIHKLW

Arabidopsis Description

At5g19920 [Source:UniProtKB/TrEMBL;Acc:Q8GX62]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.