Factsheet for AT5G19920.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra002274.1-P	Field mustard	nucleus	60.21	69.06
CDY42317	Canola	nucleus	58.99	66.15
CDY44954	Canola	nucleus	58.54	65.42
Bra020075.1-P	Field mustard	nucleus	58.08	65.35
CDX92489	Canola	cytosol	60.52	64.87
CDY35839	Canola	nucleus	60.52	48.65
AT5G50970.1	Thale cress	nucleus	34.91	44.73

Protein Annotations

Gene3D:2.130.10.10	MapMan:35.2	EntrezGene:832114	UniProt:A0A178UQT8	ProteinID:AED92766.1	EMBL:AK118414
ArrayExpress:AT5G19920	EnsemblPlantsGene:AT5G19920	RefSeq:AT5G19920	TAIR:AT5G19920	RefSeq:AT5G19920-TAIR-G	EnsemblPlants:AT5G19920.1
TAIR:AT5G19920.1	Unigene:At.31239	EMBL:BT005936	ncoils:Coil	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0007154	GO:GO:0007165	GO:GO:0008150	GO:GO:0009987	GO:GO:0032008
InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986	RefSeq:NP_197492.1	ProteinID:OAO96279.1	PFAM:PF00400
PO:PO:0000037	PO:PO:0000293	PO:PO:0001078	PO:PO:0001081	PO:PO:0001185	PO:PO:0004507
PO:PO:0007611	PO:PO:0007616	PO:PO:0009005	PO:PO:0009006	PO:PO:0009009	PO:PO:0009010
PO:PO:0009031	PO:PO:0009046	PO:PO:0009052	PO:PO:0020100	PO:PO:0025022	PFscan:PS50082
PFscan:PS50294	PANTHER:PTHR22850	PANTHER:PTHR22850:SF131	UniProt:Q8GX62	SMART:SM00320	SUPFAM:SSF50978
UniParc:UPI0000060DBC	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	InterPro:WDR24
SEG:seg	:	:	:	:	:

Description

At5g19920 [Source:UniProtKB/TrEMBL;Acc:Q8GX62]

Coordinates

chr5:-:6733211..6737496

Molecular Weight (calculated)

74060.3 Da

IEP (calculated)

8.477

GRAVY (calculated)

-0.753

Length

656 amino acids

Sequence
(BLAST)

001: MATTAMNKPK IEQGEEVEVE AEARTFSTQI PDDREALLEF MDQRAKSIQR LKDQISSLDR KLAEERKLMA DAEAKFLQID RVGNGIFSKS KPKAPGKTGS
101: ILGIAEFWNE GNKTKTANEN STPQSPSEME SLKLPSIILP PSFKRRASAT VRAEVNETTQ AQPMATRDYN IPREDTCGPE AKRPRSIPDE VVRETQDRDK
201: ETQPMATRGY DVPKEDKSGP EARRLRSIPD EVVRESQGRD NAAQPMATRD SNVPKEDKSG LDKRSRSIPN EVAQAPDNHT NKDLAKPRIR VSSNISQQGQ
301: QEKSEFRGHD ELIALIGRSS LRPTIEGRTA GMLPSCHTKR MRSLALSPSN RELFATSALD GAVHFWKLQS DRSTATLFKT VNRVAVDQKK WAEDIAWHPH
401: KNALFSVYTA DDGHPQISAI YLNEAGERCE SQFMEDRPHS KGLINRIMFT PWDDPCFITG GSDHAVVLWR DQCENNAWKP TLLHRDLHSS AVMGVTGMRH
501: NNHVLSCGDD RRFVGFDARE EKVTFKHRLD NRCTNIMPNP RDVNLVMVNT RQLDRQLRLY DVRLPQTELF SFGWKQESSE SQSALINQSW SPDGLHISSG
601: SADPVIHIFD IRYNAPSPSL SMKAHKKRVF KAEWHSSYPL LVSISSDLAI GIHKLW

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.