Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX84892 | Canola | nucleus | 79.1 | 79.26 |
| CDY45797 | Canola | nucleus | 76.95 | 75.48 |
| Bra022749.1-P | Field mustard | nucleus | 78.71 | 73.94 |
| Zm00001d012839_P002 | Maize | cytosol | 30.66 | 67.09 |
| VIT_17s0000g00230.t01 | Wine grape | nucleus | 61.72 | 60.08 |
| Os03t0851600-02 | Rice | nucleus, plastid | 44.14 | 59.47 |
| KRH54087 | Soybean | nucleus | 61.13 | 58.72 |
| KRH63866 | Soybean | nucleus | 60.55 | 58.16 |
| KRH41054 | Soybean | nucleus | 29.88 | 53.31 |
| GSMUA_Achr8P00320_001 | Banana | cytosol | 53.71 | 53.29 |
| Os08t0511500-01 | Rice | cytosol, extracellular | 10.35 | 52.48 |
| Solyc12g042200.1.1 | Tomato | nucleus | 56.05 | 49.4 |
| TraesCS5D01G545100.1 | Wheat | nucleus | 49.02 | 46.4 |
| TraesCS4A01G328700.2 | Wheat | nucleus | 48.63 | 46.2 |
| PGSC0003DMT400036938 | Potato | nucleus | 50.98 | 46.11 |
| KXG37112 | Sorghum | nucleus | 49.22 | 45.65 |
| Zm00001d034862_P003 | Maize | nucleus | 48.44 | 44.68 |
| TraesCS5B01G542700.2 | Wheat | nucleus | 49.41 | 43.62 |
| HORVU5Hr1G122810.1 | Barley | cytosol, mitochondrion, nucleus | 48.83 | 43.55 |
| Solyc03g118220.1.1 | Tomato | nucleus | 35.74 | 39.52 |
| AT5G19920.1 | Thale cress | nucleus | 44.73 | 34.91 |
| Zm00001d012840_P001 | Maize | nucleus | 13.67 | 26.12 |
| Zm00001d013894_P001 | Maize | nucleus | 7.62 | 19.8 |
Protein Annotations
| Gene3D:2.130.10.10 | MapMan:35.2 | EntrezGene:835170 | UniProt:A0A178UJ71 | ProteinID:AED96018.1 | EMBL:AK175154 |
| ArrayExpress:AT5G50970 | EnsemblPlantsGene:AT5G50970 | RefSeq:AT5G50970 | TAIR:AT5G50970 | RefSeq:AT5G50970-TAIR-G | EnsemblPlants:AT5G50970.1 |
| TAIR:AT5G50970.1 | ncoils:Coil | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 |
| GO:GO:0007154 | GO:GO:0007165 | GO:GO:0008150 | GO:GO:0009987 | GO:GO:0016020 | GO:GO:0016021 |
| GO:GO:0032008 | InterPro:IPR001680 | InterPro:IPR015943 | InterPro:IPR017986 | RefSeq:NP_199910.2 | ProteinID:OAO93655.1 |
| PFAM:PF00400 | PO:PO:0000293 | PFscan:PS50082 | PFscan:PS50294 | PANTHER:PTHR22850 | PANTHER:PTHR22850:SF131 |
| UniProt:Q683G3 | SMART:SM00320 | SUPFAM:SSF50978 | UniParc:UPI000034F2EE | InterPro:WD40/YVTN_repeat-like_dom_sf | InterPro:WD40_repeat |
| InterPro:WD40_repeat_dom | InterPro:WD40_repeat_dom_sf | InterPro:WDR24 | SEG:seg | : | : |
Description
Transducin family protein / WD-40 repeat family protein [Source:UniProtKB/TrEMBL;Acc:Q683G3]
Coordinates
chr5:+:20736227..20739358
Molecular Weight (calculated)
57982.8 Da
IEP (calculated)
9.392
GRAVY (calculated)
-0.653
Length
512 amino acids
Sequence
(BLAST)
(BLAST)
001: MSELCTNPKK PKLKEEDEEE EANVSCREEQ EEVLVALVEH RSNEIERLNN HISNYQTKLI EAERSLQNSK AKLAQLRGVA VPSISGAKKD HKPLKTLRNV
101: NVSEDYASPS PSKTLRPSDS SDHPRSSCGS SVSKAKTVVV KQKSETSRDS PNVKDRGIKR KFEQKEHKEL IRLIARNSSP TTIKCHTSNQ ISSQHKRKLR
201: SLILCPVNEQ LFATSSLDGM VSLWQLQPGR LVASLLSTTD CLSRKQRRWA EDMAWHPSGN TLFSVYTADD GDSQISILNL NKTREVTFLE NKPHVKGIIN
301: NIKFMPWENT CFVTGGSDHA VVLWNESDDE ENKWKSKPLH RNLHSAAVMG VDGMKNKNVI LSVGADKRIY GFDVQVGRAD YKHQIDYKCM SVLANPCDFN
401: LFMVQSGEPE KQLRLFDIRL RKTELHSFGW KQDSSESQSA LINQSWSPDG LYITSGSVDP VIHVFDIRYN ARKPTQSIKA HQKRVFKAEW HYSQPLLISI
501: SSDLNIGLHK IS
101: NVSEDYASPS PSKTLRPSDS SDHPRSSCGS SVSKAKTVVV KQKSETSRDS PNVKDRGIKR KFEQKEHKEL IRLIARNSSP TTIKCHTSNQ ISSQHKRKLR
201: SLILCPVNEQ LFATSSLDGM VSLWQLQPGR LVASLLSTTD CLSRKQRRWA EDMAWHPSGN TLFSVYTADD GDSQISILNL NKTREVTFLE NKPHVKGIIN
301: NIKFMPWENT CFVTGGSDHA VVLWNESDDE ENKWKSKPLH RNLHSAAVMG VDGMKNKNVI LSVGADKRIY GFDVQVGRAD YKHQIDYKCM SVLANPCDFN
401: LFMVQSGEPE KQLRLFDIRL RKTELHSFGW KQDSSESQSA LINQSWSPDG LYITSGSVDP VIHVFDIRYN ARKPTQSIKA HQKRVFKAEW HYSQPLLISI
501: SSDLNIGLHK IS
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.