Subcellular Localization
min:
: max
Winner_takes_all: extracellular, cytosol
Predictor Summary:
Predictor Summary:
- plastid 2
- mitochondrion 2
- cytosol 1
- nucleus 1
- extracellular 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Os03t0851600-02 | Rice | nucleus, plastid | 83.17 | 22.11 |
| KRH41054 | Soybean | nucleus | 47.52 | 16.72 |
| TraesCS4A01G328700.2 | Wheat | nucleus | 69.31 | 12.99 |
| TraesCS5D01G545100.1 | Wheat | nucleus | 69.31 | 12.94 |
| TraesCS5B01G542700.2 | Wheat | nucleus | 69.31 | 12.07 |
| GSMUA_Achr8P00320_001 | Banana | cytosol | 61.39 | 12.02 |
| HORVU5Hr1G122810.1 | Barley | cytosol, mitochondrion, nucleus | 67.33 | 11.85 |
| KXG37112 | Sorghum | nucleus | 60.4 | 11.05 |
| Zm00001d034862_P003 | Maize | nucleus | 60.4 | 10.99 |
| VIT_17s0000g00230.t01 | Wine grape | nucleus | 55.45 | 10.65 |
| CDX84892 | Canola | nucleus | 53.47 | 10.57 |
| KRH63866 | Soybean | nucleus | 55.45 | 10.51 |
| KRH54087 | Soybean | nucleus | 55.45 | 10.51 |
| AT5G50970.1 | Thale cress | nucleus | 52.48 | 10.35 |
| CDY45797 | Canola | nucleus | 51.49 | 9.96 |
| Bra022749.1-P | Field mustard | nucleus | 53.47 | 9.91 |
| PGSC0003DMT400036938 | Potato | nucleus | 54.46 | 9.72 |
| Zm00001d012839_P002 | Maize | cytosol | 19.8 | 8.55 |
| Zm00001d012840_P001 | Maize | nucleus | 12.87 | 4.85 |
| Os06t0315900-01 | Rice | mitochondrion | 5.94 | 3.17 |
| Solyc03g118210.2.1 | Tomato | cytosol | 0.99 | 0.83 |
Protein Annotations
| EnsemblPlants:Os08t0511500-01 | EnsemblPlantsGene:Os08g0511500 | ProteinID:BAT06202.1 | SUPFAM:SSF75011 | UniParc:UPI000393C4C3 | UniProt:A0A0N7KQ46 |
| MapMan:35.2 | : | : | : | : | : |
Description
Conserved hypothetical protein. (Os08t0511500-01)
Coordinates
chr8:+:25370038..25374002
Molecular Weight (calculated)
11381.6 Da
IEP (calculated)
8.091
GRAVY (calculated)
-0.253
Length
101 amino acids
Sequence
(BLAST)
(BLAST)
001: RHCSALDGIV TLWQVQPKGP AISLLSTTNC FSPKHRWPED VAWHPGGELI FAMYSADNGD SQVSVMNRSI SGQKKVSFLP VKPHSNEIIN NINFMLCDWW
101: K
101: K
001: MSELCTNPKK PKLKEEDEEE EANVSCREEQ EEVLVALVEH RSNEIERLNN HISNYQTKLI EAERSLQNSK AKLAQLRGVA VPSISGAKKD HKPLKTLRNV
101: NVSEDYASPS PSKTLRPSDS SDHPRSSCGS SVSKAKTVVV KQKSETSRDS PNVKDRGIKR KFEQKEHKEL IRLIARNSSP TTIKCHTSNQ ISSQHKRKLR
201: SLILCPVNEQ LFATSSLDGM VSLWQLQPGR LVASLLSTTD CLSRKQRRWA EDMAWHPSGN TLFSVYTADD GDSQISILNL NKTREVTFLE NKPHVKGIIN
301: NIKFMPWENT CFVTGGSDHA VVLWNESDDE ENKWKSKPLH RNLHSAAVMG VDGMKNKNVI LSVGADKRIY GFDVQVGRAD YKHQIDYKCM SVLANPCDFN
401: LFMVQSGEPE KQLRLFDIRL RKTELHSFGW KQDSSESQSA LINQSWSPDG LYITSGSVDP VIHVFDIRYN ARKPTQSIKA HQKRVFKAEW HYSQPLLISI
501: SSDLNIGLHK IS
101: NVSEDYASPS PSKTLRPSDS SDHPRSSCGS SVSKAKTVVV KQKSETSRDS PNVKDRGIKR KFEQKEHKEL IRLIARNSSP TTIKCHTSNQ ISSQHKRKLR
201: SLILCPVNEQ LFATSSLDGM VSLWQLQPGR LVASLLSTTD CLSRKQRRWA EDMAWHPSGN TLFSVYTADD GDSQISILNL NKTREVTFLE NKPHVKGIIN
301: NIKFMPWENT CFVTGGSDHA VVLWNESDDE ENKWKSKPLH RNLHSAAVMG VDGMKNKNVI LSVGADKRIY GFDVQVGRAD YKHQIDYKCM SVLANPCDFN
401: LFMVQSGEPE KQLRLFDIRL RKTELHSFGW KQDSSESQSA LINQSWSPDG LYITSGSVDP VIHVFDIRYN ARKPTQSIKA HQKRVFKAEW HYSQPLLISI
501: SSDLNIGLHK IS
Arabidopsis Description
Transducin family protein / WD-40 repeat family protein [Source:UniProtKB/TrEMBL;Acc:Q683G3]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.