Factsheet for HORVU5Hr1G122810.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, nucleus, cytosol

Predictor Summary:

cytosol 1
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, mitochondrion, nucleus
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
TargetP:	mitochondrion
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4A01G328700.2	Wheat	nucleus	83.62	89.05
TraesCS5D01G545100.1	Wheat	nucleus	79.79	84.66
TraesCS5B01G542700.2	Wheat	nucleus	80.14	79.31
Zm00001d012839_P002	Maize	cytosol	31.53	77.35
Os03t0851600-02	Rice	nucleus, plastid	49.83	75.26
Os08t0511500-01	Rice	cytosol, extracellular	11.85	67.33
KXG37112	Sorghum	nucleus	60.63	63.04
Zm00001d034862_P003	Maize	nucleus	58.71	60.72
Solyc03g118210.2.1	Tomato	cytosol	11.67	55.37
GSMUA_Achr8P00320_001	Banana	cytosol	48.78	54.26
VIT_17s0000g00230.t01	Wine grape	nucleus	44.77	48.86
AT5G50970.1	Thale cress	nucleus	43.55	48.83
Zm00001d012840_P001	Maize	nucleus	22.47	48.13
KRH54087	Soybean	nucleus	44.6	48.03
KRH63866	Soybean	nucleus	44.25	47.65
CDX84892	Canola	nucleus	42.16	47.36
CDY45797	Canola	nucleus	42.68	46.93
Bra022749.1-P	Field mustard	nucleus	43.73	46.05
KRH41054	Soybean	nucleus	22.65	45.3
PGSC0003DMT400036938	Potato	nucleus	39.9	40.46

Protein Annotations

Gene3D:2.130.10.10	MapMan:35.2	UniProt:A0A287T077	ncoils:Coil	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0007154	GO:GO:0007165	GO:GO:0008150	GO:GO:0009987	GO:GO:0032008
EnsemblPlantsGene:HORVU5Hr1G122810	EnsemblPlants:HORVU5Hr1G122810.1	InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986	PFscan:PS50082
PFscan:PS50294	PANTHER:PTHR22850	PANTHER:PTHR22850:SF131	SMART:SM00320	SUPFAM:SSF50978	UniParc:UPI000B48427E
InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	InterPro:WDR24	SEG:seg

Description

No Description!

Coordinates

chrchr5H:+:662806066..662812892

Molecular Weight (calculated)

63417.1 Da

IEP (calculated)

10.093

GRAVY (calculated)

-0.694

Length

574 amino acids

Sequence
(BLAST)

001: ERERERWVGG ERATPSPIPS SAPPPVGRSV AFSPAGAMGG DAPPMKRPKL EKDDGWSRHP SAANGSRPAS DAPPPPPAGE DEEELPEEAV LALIDHHERE
101: VERYKLKLEA AERKLAETRS RLAQHRGRGP DRNHPPPPPP AVQKAAAPDR RTPPPTQRES PKPSAPSHKA PAPQTRPQLV IPGAGHSRPA PRPSLPIPKK
201: SASPASSSST LGQAPQRKAE KKPKREIVQR EHQNLIQSIK KSSAPTTLKF YGGTLVSSQH KRKLRCLELC PADDQLVVTS ALDGMVALWQ VRSSGPSISL
301: LSTTNCFSSK QRWPEDVAWH PDGDTIFAVY TADGGDTQVS MMNLNTSGQK KVTYLQAKPH TKGIINNINF MPWSDTCFMT GGSDHAVMLW QEKDDSWNFK
401: KVHRDQHSSG VMGVVGLQQR KTIISVGLDK RIISYDVATE RTEYKNLIDS KCLSVLLNPS DFNLYMVQTG SPGRQLRLFD IRLRQTEVHA IGWKQTSSES
501: QSALVNQSWS PDGWYLSSGS ADPVIHIFDI RYQGQKPCQS VQAHQKRVFK AIWHQTFPVL TSISSDLNIA IHKY

Best Arabidopsis Sequence Match ( AT5G50970.1 )
(BLAST)

001: MSELCTNPKK PKLKEEDEEE EANVSCREEQ EEVLVALVEH RSNEIERLNN HISNYQTKLI EAERSLQNSK AKLAQLRGVA VPSISGAKKD HKPLKTLRNV
101: NVSEDYASPS PSKTLRPSDS SDHPRSSCGS SVSKAKTVVV KQKSETSRDS PNVKDRGIKR KFEQKEHKEL IRLIARNSSP TTIKCHTSNQ ISSQHKRKLR
201: SLILCPVNEQ LFATSSLDGM VSLWQLQPGR LVASLLSTTD CLSRKQRRWA EDMAWHPSGN TLFSVYTADD GDSQISILNL NKTREVTFLE NKPHVKGIIN
301: NIKFMPWENT CFVTGGSDHA VVLWNESDDE ENKWKSKPLH RNLHSAAVMG VDGMKNKNVI LSVGADKRIY GFDVQVGRAD YKHQIDYKCM SVLANPCDFN
401: LFMVQSGEPE KQLRLFDIRL RKTELHSFGW KQDSSESQSA LINQSWSPDG LYITSGSVDP VIHVFDIRYN ARKPTQSIKA HQKRVFKAEW HYSQPLLISI
501: SSDLNIGLHK IS

Arabidopsis Description

Transducin family protein / WD-40 repeat family protein [Source:UniProtKB/TrEMBL;Acc:Q683G3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.