Skip to main content
crop-pal logo
Maize
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • cytosol 1
  • mitochondrion 1
  • nucleus 2
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Zm00001d012839_P002 Maize cytosol 38.38 91.03
KXG37112 Sorghum nucleus 85.05 85.51
Zm00001d012840_P001 Maize nucleus 41.26 85.45
Os03t0851600-02 Rice nucleus, plastid 54.95 80.26
Zm00001d013894_P001 Maize nucleus 28.11 79.19
TraesCS4A01G328700.2 Wheat nucleus 61.8 63.64
TraesCS5D01G545100.1 Wheat nucleus 61.62 63.22
Os08t0511500-01 Rice cytosol, extracellular 10.99 60.4
TraesCS5B01G542700.2 Wheat nucleus 61.98 59.31
HORVU5Hr1G122810.1 Barley cytosol, mitochondrion, nucleus 60.72 58.71
GSMUA_Achr8P00320_001 Banana cytosol 52.61 56.59
VIT_17s0000g00230.t01 Wine grape nucleus 49.37 52.09
KRH63866 Soybean nucleus 47.03 48.97
KRH54087 Soybean nucleus 46.67 48.59
AT5G50970.1 Thale cress nucleus 44.68 48.44
CDY45797 Canola nucleus 45.05 47.89
CDX84892 Canola nucleus 43.06 46.77
KRH41054 Soybean nucleus 23.96 46.34
Bra022749.1-P Field mustard nucleus 43.78 44.59
PGSC0003DMT400036938 Potato nucleus 45.05 44.17
Protein Annotations
Gene3D:2.130.10.10MapMan:35.2UniProt:A0A1D6LC04ncoils:CoilGO:GO:0003674GO:GO:0005488
GO:GO:0005515GO:GO:0007154GO:GO:0007165GO:GO:0008150GO:GO:0009987GO:GO:0032008
InterPro:IPR001680InterPro:IPR015943InterPro:IPR017986ProteinID:ONM11634.1ProteinID:ONM11635.1PFscan:PS50082
PFscan:PS50294PANTHER:PTHR22850PANTHER:PTHR22850:SF131SMART:SM00320SUPFAM:SSF50978UniParc:UPI000221F95F
InterPro:WD40/YVTN_repeat-like_dom_sfInterPro:WD40_repeatInterPro:WD40_repeat_domInterPro:WD40_repeat_dom_sfInterPro:WDR24EnsemblPlantsGene:Zm00001d034862
EnsemblPlants:Zm00001d034862_P003EnsemblPlants:Zm00001d034862_T003SEG:seg:::
Description
transducin family protein / WD-40 repeat family protein
Coordinates
chr1:+:304066276..304071752
Molecular Weight (calculated)
61732.5 Da
IEP (calculated)
9.223
GRAVY (calculated)
-0.639
Length
555 amino acids
Sequence
(BLAST)
001: MGDPPTLKRP KLEKADDDST YCPRPSSNGA APVRTPGATA AIGAAPGDDV EEEDDIAEEA VIALIAHRER DVERCKLKLL HYQSLLDTAE MKLEEAHSRL
101: ARFRDRKPPP TRSEPKPPTP PIQREHKPSP PPIQRDLKPS PQPLIQKAPS PAPQPSARPQ LVIPGTSNRP TPRPEPMPGL KRAAAPSSSS SPAPPERSRK
201: EEKKPKIKME QKEHQNLIPS VGKSSATVLR FQGGNLVSSQ HRRKLRCLEL CPANDQLVVT SALDGLVTLW QVETRGPSLS FRGKTDFFSP KHRWPEDIAW
301: HPDGETIFAV YTADNGDSQV SMTNLISGQR KVTFLPEKPH TKGIINDISF MPWSDVCFVT GGSDHGVILW EDKDDLWKPK RVHKDFHSSA VMGVAGMQQK
401: KTILSVGCDK RIIGFDLSAG RTEFKNLIDS KCMSVLANPC DCNLYMVQTG APGRQLRLFD VRLRQSEVHA FGWKQESSES QSALINQSWS PDGWYMSSGS
501: ADPVIHIFDI RHHGQNPCQS VQAHQKRVFK AVWHRTLPYL TSISSDLNIG IHKYS
Best Arabidopsis Sequence Match ( AT5G50970.1 )
(BLAST)
001: MSELCTNPKK PKLKEEDEEE EANVSCREEQ EEVLVALVEH RSNEIERLNN HISNYQTKLI EAERSLQNSK AKLAQLRGVA VPSISGAKKD HKPLKTLRNV
101: NVSEDYASPS PSKTLRPSDS SDHPRSSCGS SVSKAKTVVV KQKSETSRDS PNVKDRGIKR KFEQKEHKEL IRLIARNSSP TTIKCHTSNQ ISSQHKRKLR
201: SLILCPVNEQ LFATSSLDGM VSLWQLQPGR LVASLLSTTD CLSRKQRRWA EDMAWHPSGN TLFSVYTADD GDSQISILNL NKTREVTFLE NKPHVKGIIN
301: NIKFMPWENT CFVTGGSDHA VVLWNESDDE ENKWKSKPLH RNLHSAAVMG VDGMKNKNVI LSVGADKRIY GFDVQVGRAD YKHQIDYKCM SVLANPCDFN
401: LFMVQSGEPE KQLRLFDIRL RKTELHSFGW KQDSSESQSA LINQSWSPDG LYITSGSVDP VIHVFDIRYN ARKPTQSIKA HQKRVFKAEW HYSQPLLISI
501: SSDLNIGLHK IS
Arabidopsis Description
Transducin family protein / WD-40 repeat family protein [Source:UniProtKB/TrEMBL;Acc:Q683G3]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.