Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 1
- nucleus 2
Predictors | GFP | MS/MS | Papers | ||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
Zm00001d012839_P002 | Maize | cytosol | 38.38 | 91.03 |
KXG37112 | Sorghum | nucleus | 85.05 | 85.51 |
Zm00001d012840_P001 | Maize | nucleus | 41.26 | 85.45 |
Os03t0851600-02 | Rice | nucleus, plastid | 54.95 | 80.26 |
Zm00001d013894_P001 | Maize | nucleus | 28.11 | 79.19 |
TraesCS4A01G328700.2 | Wheat | nucleus | 61.8 | 63.64 |
TraesCS5D01G545100.1 | Wheat | nucleus | 61.62 | 63.22 |
Os08t0511500-01 | Rice | cytosol, extracellular | 10.99 | 60.4 |
TraesCS5B01G542700.2 | Wheat | nucleus | 61.98 | 59.31 |
HORVU5Hr1G122810.1 | Barley | cytosol, mitochondrion, nucleus | 60.72 | 58.71 |
GSMUA_Achr8P00320_001 | Banana | cytosol | 52.61 | 56.59 |
VIT_17s0000g00230.t01 | Wine grape | nucleus | 49.37 | 52.09 |
KRH63866 | Soybean | nucleus | 47.03 | 48.97 |
KRH54087 | Soybean | nucleus | 46.67 | 48.59 |
AT5G50970.1 | Thale cress | nucleus | 44.68 | 48.44 |
CDY45797 | Canola | nucleus | 45.05 | 47.89 |
CDX84892 | Canola | nucleus | 43.06 | 46.77 |
KRH41054 | Soybean | nucleus | 23.96 | 46.34 |
Bra022749.1-P | Field mustard | nucleus | 43.78 | 44.59 |
PGSC0003DMT400036938 | Potato | nucleus | 45.05 | 44.17 |
Protein Annotations
Gene3D:2.130.10.10 | MapMan:35.2 | UniProt:A0A1D6LC04 | ncoils:Coil | GO:GO:0003674 | GO:GO:0005488 |
GO:GO:0005515 | GO:GO:0007154 | GO:GO:0007165 | GO:GO:0008150 | GO:GO:0009987 | GO:GO:0032008 |
InterPro:IPR001680 | InterPro:IPR015943 | InterPro:IPR017986 | ProteinID:ONM11634.1 | ProteinID:ONM11635.1 | PFscan:PS50082 |
PFscan:PS50294 | PANTHER:PTHR22850 | PANTHER:PTHR22850:SF131 | SMART:SM00320 | SUPFAM:SSF50978 | UniParc:UPI000221F95F |
InterPro:WD40/YVTN_repeat-like_dom_sf | InterPro:WD40_repeat | InterPro:WD40_repeat_dom | InterPro:WD40_repeat_dom_sf | InterPro:WDR24 | EnsemblPlantsGene:Zm00001d034862 |
EnsemblPlants:Zm00001d034862_P003 | EnsemblPlants:Zm00001d034862_T003 | SEG:seg | : | : | : |
Description
transducin family protein / WD-40 repeat family protein
Coordinates
chr1:+:304066276..304071752
Molecular Weight (calculated)
61732.5 Da
IEP (calculated)
9.223
GRAVY (calculated)
-0.639
Length
555 amino acids
Sequence
(BLAST)
(BLAST)
001: MGDPPTLKRP KLEKADDDST YCPRPSSNGA APVRTPGATA AIGAAPGDDV EEEDDIAEEA VIALIAHRER DVERCKLKLL HYQSLLDTAE MKLEEAHSRL
101: ARFRDRKPPP TRSEPKPPTP PIQREHKPSP PPIQRDLKPS PQPLIQKAPS PAPQPSARPQ LVIPGTSNRP TPRPEPMPGL KRAAAPSSSS SPAPPERSRK
201: EEKKPKIKME QKEHQNLIPS VGKSSATVLR FQGGNLVSSQ HRRKLRCLEL CPANDQLVVT SALDGLVTLW QVETRGPSLS FRGKTDFFSP KHRWPEDIAW
301: HPDGETIFAV YTADNGDSQV SMTNLISGQR KVTFLPEKPH TKGIINDISF MPWSDVCFVT GGSDHGVILW EDKDDLWKPK RVHKDFHSSA VMGVAGMQQK
401: KTILSVGCDK RIIGFDLSAG RTEFKNLIDS KCMSVLANPC DCNLYMVQTG APGRQLRLFD VRLRQSEVHA FGWKQESSES QSALINQSWS PDGWYMSSGS
501: ADPVIHIFDI RHHGQNPCQS VQAHQKRVFK AVWHRTLPYL TSISSDLNIG IHKYS
101: ARFRDRKPPP TRSEPKPPTP PIQREHKPSP PPIQRDLKPS PQPLIQKAPS PAPQPSARPQ LVIPGTSNRP TPRPEPMPGL KRAAAPSSSS SPAPPERSRK
201: EEKKPKIKME QKEHQNLIPS VGKSSATVLR FQGGNLVSSQ HRRKLRCLEL CPANDQLVVT SALDGLVTLW QVETRGPSLS FRGKTDFFSP KHRWPEDIAW
301: HPDGETIFAV YTADNGDSQV SMTNLISGQR KVTFLPEKPH TKGIINDISF MPWSDVCFVT GGSDHGVILW EDKDDLWKPK RVHKDFHSSA VMGVAGMQQK
401: KTILSVGCDK RIIGFDLSAG RTEFKNLIDS KCMSVLANPC DCNLYMVQTG APGRQLRLFD VRLRQSEVHA FGWKQESSES QSALINQSWS PDGWYMSSGS
501: ADPVIHIFDI RHHGQNPCQS VQAHQKRVFK AVWHRTLPYL TSISSDLNIG IHKYS
001: MSELCTNPKK PKLKEEDEEE EANVSCREEQ EEVLVALVEH RSNEIERLNN HISNYQTKLI EAERSLQNSK AKLAQLRGVA VPSISGAKKD HKPLKTLRNV
101: NVSEDYASPS PSKTLRPSDS SDHPRSSCGS SVSKAKTVVV KQKSETSRDS PNVKDRGIKR KFEQKEHKEL IRLIARNSSP TTIKCHTSNQ ISSQHKRKLR
201: SLILCPVNEQ LFATSSLDGM VSLWQLQPGR LVASLLSTTD CLSRKQRRWA EDMAWHPSGN TLFSVYTADD GDSQISILNL NKTREVTFLE NKPHVKGIIN
301: NIKFMPWENT CFVTGGSDHA VVLWNESDDE ENKWKSKPLH RNLHSAAVMG VDGMKNKNVI LSVGADKRIY GFDVQVGRAD YKHQIDYKCM SVLANPCDFN
401: LFMVQSGEPE KQLRLFDIRL RKTELHSFGW KQDSSESQSA LINQSWSPDG LYITSGSVDP VIHVFDIRYN ARKPTQSIKA HQKRVFKAEW HYSQPLLISI
501: SSDLNIGLHK IS
101: NVSEDYASPS PSKTLRPSDS SDHPRSSCGS SVSKAKTVVV KQKSETSRDS PNVKDRGIKR KFEQKEHKEL IRLIARNSSP TTIKCHTSNQ ISSQHKRKLR
201: SLILCPVNEQ LFATSSLDGM VSLWQLQPGR LVASLLSTTD CLSRKQRRWA EDMAWHPSGN TLFSVYTADD GDSQISILNL NKTREVTFLE NKPHVKGIIN
301: NIKFMPWENT CFVTGGSDHA VVLWNESDDE ENKWKSKPLH RNLHSAAVMG VDGMKNKNVI LSVGADKRIY GFDVQVGRAD YKHQIDYKCM SVLANPCDFN
401: LFMVQSGEPE KQLRLFDIRL RKTELHSFGW KQDSSESQSA LINQSWSPDG LYITSGSVDP VIHVFDIRYN ARKPTQSIKA HQKRVFKAEW HYSQPLLISI
501: SSDLNIGLHK IS
Arabidopsis Description
Transducin family protein / WD-40 repeat family protein [Source:UniProtKB/TrEMBL;Acc:Q683G3]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.