Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- mitochondrion 1
- cytosol 1
- plastid 2
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d012840_P001 | Maize | nucleus | 70.56 | 51.87 |
| Zm00001d034862_P003 | Maize | nucleus | 79.19 | 28.11 |
| GSMUA_Achr8P00320_001 | Banana | cytosol | 27.41 | 10.47 |
| KRH63866 | Soybean | nucleus | 25.89 | 9.57 |
| VIT_17s0000g00230.t01 | Wine grape | nucleus | 25.38 | 9.51 |
| KRH54087 | Soybean | nucleus | 24.87 | 9.19 |
| PGSC0003DMT400036938 | Potato | nucleus | 24.87 | 8.66 |
| CDY45797 | Canola | nucleus | 22.34 | 8.43 |
| AT5G50970.1 | Thale cress | nucleus | 19.8 | 7.62 |
| Bra022749.1-P | Field mustard | nucleus | 19.29 | 6.97 |
| CDX84892 | Canola | nucleus | 17.77 | 6.85 |
| KRH41054 | Soybean | nucleus | 4.06 | 2.79 |
| Solyc03g118210.2.1 | Tomato | cytosol | 0.0 | 0.0 |
| Zm00001d012839_P002 | Maize | cytosol | 0.0 | 0.0 |
Protein Annotations
| EnsemblPlants:Zm00001d013894_P001 | EnsemblPlants:Zm00001d013894_T001 | EnsemblPlantsGene:Zm00001d013894 | ncoils:Coil | ProteinID:AQK64761.1 | SEG:seg |
| UniParc:UPI0008446B98 | UniProt:A0A1D6GNF2 | MapMan:35.2 | : | : | : |
Description
transducin family protein / WD-40 repeat family protein
Coordinates
chr5:-:24019244..24026165
Molecular Weight (calculated)
21972.4 Da
IEP (calculated)
11.981
GRAVY (calculated)
-1.145
Length
197 amino acids
Sequence
(BLAST)
(BLAST)
001: MEGPRVHQGY TSTSSSHPPS VALRPQINSR WSPQLDTVEM KLEEAHSRLA RFRDRKPPPT RSEPKPPTPP IQREHNPSPP PIQRDLKPSL QPPIQKAPSP
101: APQPSARPQL VIPRTSNRPT PRPEPMPGLK RAAAPSSSSS PAPPERSRKE EKKPKIKMEQ KGHPNLITSV GKSSATVFRF QGRNLVSSQH RRKLMPC
101: APQPSARPQL VIPRTSNRPT PRPEPMPGLK RAAAPSSSSS PAPPERSRKE EKKPKIKMEQ KGHPNLITSV GKSSATVFRF QGRNLVSSQH RRKLMPC
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.