CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX84892	Canola	nucleus	81.03	82.78
AT5G50970.1	Thale cress	nucleus	75.48	76.95
Zm00001d012839_P002	Maize	cytosol	29.31	65.38
Os03t0851600-02	Rice	nucleus, plastid	43.49	59.74
VIT_17s0000g00230.t01	Wine grape	nucleus	59.39	58.94
KRH54087	Soybean	nucleus	57.47	56.29
KRH63866	Soybean	nucleus	57.47	56.29
KRH41054	Soybean	nucleus	29.89	54.36
GSMUA_Achr8P00320_001	Banana	cytosol	53.07	53.68
Os08t0511500-01	Rice	cytosol, extracellular	9.96	51.49
Solyc12g042200.1.1	Tomato	nucleus	53.83	48.36
TraesCS4A01G328700.2	Wheat	nucleus	47.32	45.83
TraesCS5D01G545100.1	Wheat	nucleus	47.32	45.66
KXG37112	Sorghum	nucleus	48.28	45.65
PGSC0003DMT400036938	Potato	nucleus	49.43	45.58
Zm00001d034862_P003	Maize	nucleus	47.89	45.05
TraesCS5B01G542700.2	Wheat	nucleus	47.7	42.93
HORVU5Hr1G122810.1	Barley	cytosol, mitochondrion, nucleus	46.93	42.68
Solyc03g118220.1.1	Tomato	nucleus	34.87	39.31
CDX92489	Canola	cytosol	43.87	37.42
CDY44954	Canola	nucleus	41.57	36.97
CDY42317	Canola	nucleus	41.0	36.58
Zm00001d012840_P001	Maize	nucleus	14.75	28.73
CDY35839	Canola	nucleus	43.68	27.94
Zm00001d013894_P001	Maize	nucleus	8.43	22.34
CDX92490	Canola	nucleus	6.51	17.17

Protein Annotations

Gene3D:2.130.10.10	MapMan:35.2	UniProt:A0A078I6N6	EnsemblPlants:CDY45797	ProteinID:CDY45797	ProteinID:CDY45797.1
ncoils:Coil	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0007154	GO:GO:0007165
GO:GO:0008150	GO:GO:0009987	GO:GO:0032008	EnsemblPlantsGene:GSBRNA2T00082728001	InterPro:IPR001680	InterPro:IPR015943
InterPro:IPR017986	PFAM:PF00400	PFscan:PS50082	PFscan:PS50294	PANTHER:PTHR22850	PANTHER:PTHR22850:SF131
SMART:SM00320	SUPFAM:SSF50978	UniParc:UPI0004EE21BC	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_dom
InterPro:WD40_repeat_dom_sf	InterPro:WDR24	SEG:seg	:	:	:

Description

BnaC03g16200DBnaC03g16200D protein [Source:UniProtKB/TrEMBL;Acc:A0A078I6N6]

Coordinates

chrLK032637:-:31662..34313

Molecular Weight (calculated)

59034.7 Da

IEP (calculated)

10.079

GRAVY (calculated)

-0.744

Length

522 amino acids

Sequence
(BLAST)

001: MSELQKPKSK REEEEEEANN NVGCREEQEQ ALVALVEHRS AEIDRLKHHI SNYQTKLIEA QRSLRDSKAK LSNLRGHDES ARNVTPSRKD SSYPSPSPSK
101: ILKPSVPPSS ISKSKTNTVV VKQKPETSSS RDGFSNSKTK TVVVKQKPET SSSRDSPNLK ASRDRDKGTK RKFEHKEHKE LIRFIARNSS PTTIKCHSSN
201: QISSQHKRKL RSLILCPVNE QLFATSSLDG MVSLWQLQPG RLSASLLSTT DCLSQKQRRW GEDMAWHPSG HALFSVYTAD DGDSQISILN LNKTRGVTFL
301: ENKPHVKGII NSIKFMPWEN TCFVTGGSDH AVVLWNESDE ENKWTSKTLH RNLHSAAVMG VDGMRNKNVV LSVGADKRIY GFDVQVGRAD YKHQIDYKCM
401: SVLSNPCDFN LFMVQSGEPE KQLRLFDIRL RRTELHSFGW KQDSSESQSA LINQSWSPDG LHITSGSADP VIHVFDIRYN ARKPTQSIKA HQKRVFKAEW
501: HYSQPLLISI SSDLNIGLHK IS

Best Arabidopsis Sequence Match ( AT5G50970.1 )
(BLAST)

001: MSELCTNPKK PKLKEEDEEE EANVSCREEQ EEVLVALVEH RSNEIERLNN HISNYQTKLI EAERSLQNSK AKLAQLRGVA VPSISGAKKD HKPLKTLRNV
101: NVSEDYASPS PSKTLRPSDS SDHPRSSCGS SVSKAKTVVV KQKSETSRDS PNVKDRGIKR KFEQKEHKEL IRLIARNSSP TTIKCHTSNQ ISSQHKRKLR
201: SLILCPVNEQ LFATSSLDGM VSLWQLQPGR LVASLLSTTD CLSRKQRRWA EDMAWHPSGN TLFSVYTADD GDSQISILNL NKTREVTFLE NKPHVKGIIN
301: NIKFMPWENT CFVTGGSDHA VVLWNESDDE ENKWKSKPLH RNLHSAAVMG VDGMKNKNVI LSVGADKRIY GFDVQVGRAD YKHQIDYKCM SVLANPCDFN
401: LFMVQSGEPE KQLRLFDIRL RKTELHSFGW KQDSSESQSA LINQSWSPDG LYITSGSVDP VIHVFDIRYN ARKPTQSIKA HQKRVFKAEW HYSQPLLISI
501: SSDLNIGLHK IS

Arabidopsis Description

Transducin family protein / WD-40 repeat family protein [Source:UniProtKB/TrEMBL;Acc:Q683G3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.