CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d012839_P002	Maize	cytosol	39.49	93.16
Zm00001d034862_P003	Maize	nucleus	85.51	85.05
Os03t0851600-02	Rice	nucleus, plastid	54.89	79.74
Zm00001d012840_P001	Maize	nucleus	36.59	75.37
TraesCS4A01G328700.2	Wheat	nucleus	64.13	65.68
TraesCS5D01G545100.1	Wheat	nucleus	64.13	65.43
TraesCS5B01G542700.2	Wheat	nucleus	64.67	61.55
HORVU5Hr1G122810.1	Barley	cytosol, mitochondrion, nucleus	63.04	60.63
Os08t0511500-01	Rice	cytosol, extracellular	11.05	60.4
Solyc03g118210.2.1	Tomato	cytosol	12.86	58.68
GSMUA_Achr8P00320_001	Banana	cytosol	53.8	57.56
VIT_17s0000g00230.t01	Wine grape	nucleus	48.91	51.33
KRH63866	Soybean	nucleus	47.64	49.34
AT5G50970.1	Thale cress	nucleus	45.65	49.22
KRH54087	Soybean	nucleus	47.1	48.78
CDY45797	Canola	nucleus	45.65	48.28
CDX84892	Canola	nucleus	44.02	47.55
KRH41054	Soybean	nucleus	24.09	46.34
Bra022749.1-P	Field mustard	nucleus	44.57	45.14
PGSC0003DMT400036938	Potato	nucleus	45.11	43.99

Protein Annotations

Gene3D:2.130.10.10	MapMan:35.2	UniProt:A0A1B6QGQ9	ncoils:Coil	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0007154	GO:GO:0007165	GO:GO:0008150	GO:GO:0009987	GO:GO:0032008
InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986	EnsemblPlants:KXG37112	ProteinID:KXG37112	ProteinID:KXG37112.2
PFscan:PS50082	PFscan:PS50294	PANTHER:PTHR22850	PANTHER:PTHR22850:SF131	SMART:SM00320	EnsemblPlantsGene:SORBI_3001G010300
SUPFAM:SSF50978	UniParc:UPI000B423693	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf
InterPro:WDR24	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr1:-:919634..925242

Molecular Weight (calculated)

61530.0 Da

IEP (calculated)

9.290

GRAVY (calculated)

-0.681

Length

552 amino acids

Sequence
(BLAST)

001: MGDPPALKRP KLEKDDNGST YCPCPASNGA GAAAASGAPP RDDVEEEDDD ISEEAVVALI AHRERDVERC KLKLLHYQSL LDTAEMKLEE AQSRLARFRD
101: RKPPTTRSEP KLPTPPIHRD PKPSPPPIQR DLKPSPQPPL PEKKAPSPAP QPSARPHLVI PGTSNRPAPR PEPMPGLKKA AAPSSSSSPA PPERSRKEEK
201: KPKRKIEQKE HQNLIPNVKK SSATVLKFQG GNLVSSQHRR KLRCLELCPA NDQLVVTSAL DGLVTLWQVE TRGPSLSFRG KTDFFSPKHR WPEDIAWHPD
301: GETIFAVYTA DNDDSQVSMT NLISGQRKVT FLPEKPHTKG IINNISFMPW SDACFVTGGS DHAIILWEDK DDSWKPKRVH KDFHSSAVMG VAGLQQKKTI
401: LSVGYDKRII GFDLSAGRTE FKNLIDSKCM SVLANPCDFN LYMVQTGAPG RQLRLFDVRL RQTEVHAFGW KQESSESQSA LINQSWSPDG WYVSSGSADP
501: VIHIFDIRYH GQNPCQSVQA HQKRVFKAVW HQTLPYLTSI SSDLNIGIHR YS

Best Arabidopsis Sequence Match ( AT5G50970.1 )
(BLAST)

001: MSELCTNPKK PKLKEEDEEE EANVSCREEQ EEVLVALVEH RSNEIERLNN HISNYQTKLI EAERSLQNSK AKLAQLRGVA VPSISGAKKD HKPLKTLRNV
101: NVSEDYASPS PSKTLRPSDS SDHPRSSCGS SVSKAKTVVV KQKSETSRDS PNVKDRGIKR KFEQKEHKEL IRLIARNSSP TTIKCHTSNQ ISSQHKRKLR
201: SLILCPVNEQ LFATSSLDGM VSLWQLQPGR LVASLLSTTD CLSRKQRRWA EDMAWHPSGN TLFSVYTADD GDSQISILNL NKTREVTFLE NKPHVKGIIN
301: NIKFMPWENT CFVTGGSDHA VVLWNESDDE ENKWKSKPLH RNLHSAAVMG VDGMKNKNVI LSVGADKRIY GFDVQVGRAD YKHQIDYKCM SVLANPCDFN
401: LFMVQSGEPE KQLRLFDIRL RKTELHSFGW KQDSSESQSA LINQSWSPDG LYITSGSVDP VIHVFDIRYN ARKPTQSIKA HQKRVFKAEW HYSQPLLISI
501: SSDLNIGLHK IS

Arabidopsis Description

Transducin family protein / WD-40 repeat family protein [Source:UniProtKB/TrEMBL;Acc:Q683G3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.