Factsheet for Os03t0851600-02

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

nucleus 4
plastid 4
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d012839_P002	Maize	cytosol	51.58	83.76
Os08t0511500-01	Rice	cytosol, extracellular	22.11	83.17
Solyc03g118210.2.1	Tomato	cytosol	18.42	57.85
Zm00001d034862_P003	Maize	nucleus	80.26	54.95
KXG37112	Sorghum	nucleus	79.74	54.89
TraesCS4A01G328700.2	Wheat	nucleus	77.11	54.36
TraesCS5D01G545100.1	Wheat	nucleus	76.84	53.97
TraesCS5B01G542700.2	Wheat	nucleus	76.84	50.34
GSMUA_Achr8P00320_001	Banana	cytosol	68.16	50.19
HORVU5Hr1G122810.1	Barley	cytosol, mitochondrion, nucleus	75.26	49.83
VIT_17s0000g00230.t01	Wine grape	nucleus	62.11	44.87
AT5G50970.1	Thale cress	nucleus	59.47	44.14
CDY45797	Canola	nucleus	59.74	43.49
CDX84892	Canola	nucleus	58.42	43.44
KRH63866	Soybean	nucleus	60.26	42.96
KRH54087	Soybean	nucleus	60.26	42.96
KRH41054	Soybean	nucleus	31.58	41.81
Bra022749.1-P	Field mustard	nucleus	59.47	41.47
PGSC0003DMT400036938	Potato	nucleus	57.89	38.87
Zm00001d012840_P001	Maize	nucleus	19.47	27.61
Os06t0315900-01	Rice	mitochondrion	6.32	12.7

Protein Annotations

Gene3D:2.130.10.10	MapMan:35.2	ProteinID:ABF99932.1	ProteinID:BAS87391.1	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0007154	GO:GO:0007165	GO:GO:0008150	GO:GO:0009987	GO:GO:0032008
InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986	EnsemblPlantsGene:Os03g0851600	EnsemblPlants:Os03t0851600-02	PFscan:PS50294
PANTHER:PTHR22850	PANTHER:PTHR22850:SF131	UniProt:Q10AI1	SMART:SM00320	SUPFAM:SSF50978	UniParc:UPI0000DB4F19
InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	InterPro:WDR24	SEG:seg

Description

OsWD40-96Hypothetical conserved gene. (Os03t0851600-01);Similar to WD-40 repeat family protein. (Os03t0851600-02)

Coordinates

chr3:+:35855784..35860488

Molecular Weight (calculated)

42375.8 Da

IEP (calculated)

9.777

GRAVY (calculated)

-0.373

Length

380 amino acids

Sequence
(BLAST)

001: MPGLKKTAAP SSSSASVPPE RPRALEKKPK LKIEQKEHQN LIQSVKKSSA TVLRFYGGTV ICSQHKRKLR CLELCPVNDQ LVATSALDGI VTLWQVQPKG
101: PVISLLSTTD CFSPKHRWPE DVAWHPHGEL IFAVYSADNG DSQVSVMNRN LSGQKKVSFL PVKPHTKGII NNINFMPWSD VCFVTGGSDH AVILWQEKDD
201: SWNHKKVHKD LHSSAVMGVA GLQQKSTILS VGSDKRIISF DLAAGRTESK NLIDYKCMSV LPNPCDFNLY MVQTAAPGRQ LRLFDVRLRQ TEVHTLGWKQ
301: ESSESQSALI NQSWSPDGWY LSSGSADPMI HIFDIRHNGQ NPCQSVQAHQ KRVFKALWHR TAPVLTSISS DLNIGIHKYS

Best Arabidopsis Sequence Match ( AT5G50970.1 )
(BLAST)

001: MSELCTNPKK PKLKEEDEEE EANVSCREEQ EEVLVALVEH RSNEIERLNN HISNYQTKLI EAERSLQNSK AKLAQLRGVA VPSISGAKKD HKPLKTLRNV
101: NVSEDYASPS PSKTLRPSDS SDHPRSSCGS SVSKAKTVVV KQKSETSRDS PNVKDRGIKR KFEQKEHKEL IRLIARNSSP TTIKCHTSNQ ISSQHKRKLR
201: SLILCPVNEQ LFATSSLDGM VSLWQLQPGR LVASLLSTTD CLSRKQRRWA EDMAWHPSGN TLFSVYTADD GDSQISILNL NKTREVTFLE NKPHVKGIIN
301: NIKFMPWENT CFVTGGSDHA VVLWNESDDE ENKWKSKPLH RNLHSAAVMG VDGMKNKNVI LSVGADKRIY GFDVQVGRAD YKHQIDYKCM SVLANPCDFN
401: LFMVQSGEPE KQLRLFDIRL RKTELHSFGW KQDSSESQSA LINQSWSPDG LYITSGSVDP VIHVFDIRYN ARKPTQSIKA HQKRVFKAEW HYSQPLLISI
501: SSDLNIGLHK IS

Arabidopsis Description

Transducin family protein / WD-40 repeat family protein [Source:UniProtKB/TrEMBL;Acc:Q683G3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.