Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion
Predictor Summary:
Predictor Summary:
- plastid 1
- nucleus 3
- mitochondrion 4
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Os03t0851600-02 | Rice | nucleus, plastid | 12.7 | 6.32 |
| Os08t0511500-01 | Rice | cytosol, extracellular | 3.17 | 5.94 |
Protein Annotations
| Gene3D:1.20.930.10 | MapMan:35.2 | UniProt:A0A0P0WW38 | ProteinID:BAS97466.1 | ncoils:Coil | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | InterPro:IPR017923 | InterPro:IPR035441 | EnsemblPlantsGene:Os06g0315900 |
| EnsemblPlants:Os06t0315900-01 | PFAM:PF08711 | PFscan:PS51319 | PANTHER:PTHR15141 | PANTHER:PTHR15141:SF69 | SMART:SM00509 |
| SUPFAM:SSF47676 | InterPro:TFIIS/CRSP70_N_sub | InterPro:TFIIS/LEDGF_dom_sf | InterPro:TFIIS_N | UniParc:UPI0000E127A1 | SEG:seg |
Description
Transcription elongation factor, TFIIS/CRSP70, N-terminal, sub-type domain containing protein. (Os06t0315900-01)
Coordinates
chr6:+:12186509..12190658
Molecular Weight (calculated)
20946.3 Da
IEP (calculated)
10.745
GRAVY (calculated)
-0.485
Length
189 amino acids
Sequence
(BLAST)
(BLAST)
001: FSPHCRRRLA GDGLLARLLP GRRGQHLRRH RRRGVRPPRR AQVEAGRHRP ALLHGVPLAV PPTGGTATEA PPPQLLHPEG AASVPSICSS DRANVIADDG
101: GVPCHEDPVA AETERIKAVL LNDQEKSEAT LLELLRRLQQ LELTVDTLTV TEIGKAVSSY RKHNSKQIRH LVQLLIEGWK RILDEWMSS
101: GVPCHEDPVA AETERIKAVL LNDQEKSEAT LLELLRRLQQ LELTVDTLTV TEIGKAVSSY RKHNSKQIRH LVQLLIEGWK RILDEWMSS
001: MKASGSLDSW REYFRRRGDS DIFGIIDHAI MVAATDCPNK FKSRRDKIAE LLFSCRVNRC VGCDHLELSV PGDDEANRGT TGNGGGGTAV DEDYEVAGGS
101: KESKANSSRG DNNQIVSNYT FDEAEALSDE IEEFSVVSKE VARIKEILLN KEDEPNSVLL DSLRHLKLMS LNVDILKSTE IGKAVNGLRK HSSDKIRQLA
201: KTLIAEWKEL VDQWVNTTKE ITGAEGTPES ANPSVLDEEE AFPSLPYDVD IFTPEPNGFE ISHFFDSLDF DGNPRNSEEH NTSREHERRP QNIAKRKPEG
301: TQMRIQDAPF RSIKPSSATD FDGTRRPVKQ STEQRMKNET VSVHKSEKPM IQRKPVVTEQ KRKAPGPQQE KLKGLDADAK FEFAKRKLQE SYQHHENAKK
401: QRTIQVLEMI PKQGSAQKPQ LKRPGMSNRN WANGRK
101: KESKANSSRG DNNQIVSNYT FDEAEALSDE IEEFSVVSKE VARIKEILLN KEDEPNSVLL DSLRHLKLMS LNVDILKSTE IGKAVNGLRK HSSDKIRQLA
201: KTLIAEWKEL VDQWVNTTKE ITGAEGTPES ANPSVLDEEE AFPSLPYDVD IFTPEPNGFE ISHFFDSLDF DGNPRNSEEH NTSREHERRP QNIAKRKPEG
301: TQMRIQDAPF RSIKPSSATD FDGTRRPVKQ STEQRMKNET VSVHKSEKPM IQRKPVVTEQ KRKAPGPQQE KLKGLDADAK FEFAKRKLQE SYQHHENAKK
401: QRTIQVLEMI PKQGSAQKPQ LKRPGMSNRN WANGRK
Arabidopsis Description
MED26BProbable mediator of RNA polymerase II transcription subunit 26b [Source:UniProtKB/Swiss-Prot;Acc:Q9FHK9]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.