Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5D01G545100.1 | Wheat | nucleus | 90.17 | 89.83 |
| TraesCS5B01G542700.2 | Wheat | nucleus | 91.09 | 84.66 |
| HORVU5Hr1G122810.1 | Barley | cytosol, mitochondrion, nucleus | 89.05 | 83.62 |
| Zm00001d012839_P002 | Maize | cytosol | 34.51 | 79.49 |
| Os03t0851600-02 | Rice | nucleus, plastid | 54.36 | 77.11 |
| Os08t0511500-01 | Rice | cytosol, extracellular | 12.99 | 69.31 |
| KXG37112 | Sorghum | nucleus | 65.68 | 64.13 |
| Zm00001d034862_P003 | Maize | nucleus | 63.64 | 61.8 |
| Solyc03g118210.2.1 | Tomato | cytosol | 12.62 | 56.2 |
| GSMUA_Achr8P00320_001 | Banana | cytosol | 52.5 | 54.84 |
| VIT_17s0000g00230.t01 | Wine grape | nucleus | 47.68 | 48.86 |
| AT5G50970.1 | Thale cress | nucleus | 46.2 | 48.63 |
| KRH54087 | Soybean | nucleus | 48.05 | 48.59 |
| KRH63866 | Soybean | nucleus | 47.87 | 48.41 |
| Zm00001d012840_P001 | Maize | nucleus | 23.56 | 47.39 |
| CDX84892 | Canola | nucleus | 44.9 | 47.36 |
| CDY45797 | Canola | nucleus | 45.83 | 47.32 |
| KRH41054 | Soybean | nucleus | 24.86 | 46.69 |
| Bra022749.1-P | Field mustard | nucleus | 46.38 | 45.87 |
| PGSC0003DMT400036938 | Potato | nucleus | 43.41 | 41.34 |
Protein Annotations
| Gene3D:2.130.10.10 | MapMan:35.2 | ncoils:Coil | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0007154 | GO:GO:0007165 | GO:GO:0008150 | GO:GO:0009987 | GO:GO:0032008 | InterPro:IPR001680 |
| InterPro:IPR015943 | InterPro:IPR017986 | PFscan:PS50082 | PFscan:PS50294 | PANTHER:PTHR22850 | PANTHER:PTHR22850:SF131 |
| SMART:SM00320 | SUPFAM:SSF50978 | EnsemblPlantsGene:TraesCS4A01G328700 | EnsemblPlants:TraesCS4A01G328700.2 | InterPro:WD40/YVTN_repeat-like_dom_sf | InterPro:WD40_repeat |
| InterPro:WD40_repeat_dom | InterPro:WD40_repeat_dom_sf | InterPro:WDR24 | SEG:seg | : | : |
Description
No Description!
Coordinates
chr4A:-:614111306..614116597
Molecular Weight (calculated)
59858.1 Da
IEP (calculated)
10.113
GRAVY (calculated)
-0.678
Length
539 amino acids
Sequence
(BLAST)
(BLAST)
001: MGGDAPPMKR PKLEKDDGWS RHPSPANGSA PRPPASASRA PPPDGEDDDG ELPEEAVLAL IAHHEREVER YKLKLEAAEK KLAETRSRLV RHRGRAPDWN
101: HPPPPPPPVQ KAAVPDRRTP PPSQREPPKP SVQSQKPPAP QARPQLVIPG AGHSRPAPRP TLPVPKKSPS SSSPSLVQAP QRKAEKKPKR EIVQREHQNL
201: VQSVKKSSAP TTLKFYGGTL VSSQHKRKLR CLELCPADDQ LVVTSALDGM VTLWQVQSSG PSISLLSTTN CFSSKQRWPE DVAWHPDGDT IFAVYTADGG
301: DTQVSMMNLN TSGQKKVTFL QAKPHTKGII NNINFMPWSD TCFMTGGSDH AVMLWQEKDD SWNHKKVHRD LHSSAVMGVA GLQQRKTIIS VGMDKRIISY
401: DVSAERAEYK NLIDSKCLSV LLNPTDFNLY MVQTGSPGRQ LRLFDIRLRQ TEVHAIGWKQ TSSESQSALI NQSWSPDGWY LSSGSADPVI HIFDIRYQGQ
501: KPCQSVQAHQ KRVFKAVWHQ TFPVLTSISS DLNVAIHKY
101: HPPPPPPPVQ KAAVPDRRTP PPSQREPPKP SVQSQKPPAP QARPQLVIPG AGHSRPAPRP TLPVPKKSPS SSSPSLVQAP QRKAEKKPKR EIVQREHQNL
201: VQSVKKSSAP TTLKFYGGTL VSSQHKRKLR CLELCPADDQ LVVTSALDGM VTLWQVQSSG PSISLLSTTN CFSSKQRWPE DVAWHPDGDT IFAVYTADGG
301: DTQVSMMNLN TSGQKKVTFL QAKPHTKGII NNINFMPWSD TCFMTGGSDH AVMLWQEKDD SWNHKKVHRD LHSSAVMGVA GLQQRKTIIS VGMDKRIISY
401: DVSAERAEYK NLIDSKCLSV LLNPTDFNLY MVQTGSPGRQ LRLFDIRLRQ TEVHAIGWKQ TSSESQSALI NQSWSPDGWY LSSGSADPVI HIFDIRYQGQ
501: KPCQSVQAHQ KRVFKAVWHQ TFPVLTSISS DLNVAIHKY
001: MATTAMNKPK IEQGEEVEVE AEARTFSTQI PDDREALLEF MDQRAKSIQR LKDQISSLDR KLAEERKLMA DAEAKFLQID RVGNGIFSKS KPKAPGKTGS
101: ILGIAEFWNE GNKTKTANEN STPQSPSEME SLKLPSIILP PSFKRRASAT VRAEVNETTQ AQPMATRDYN IPREDTCGPE AKRPRSIPDE VVRETQDRDK
201: ETQPMATRGY DVPKEDKSGP EARRLRSIPD EVVRESQGRD NAAQPMATRD SNVPKEDKSG LDKRSRSIPN EVAQAPDNHT NKDLAKPRIR VSSNISQQGQ
301: QEKSEFRGHD ELIALIGRSS LRPTIEGRTA GMLPSCHTKR MRSLALSPSN RELFATSALD GAVHFWKLQS DRSTATLFKT VNRVAVDQKK WAEDIAWHPH
401: KNALFSVYTA DDGHPQISAI YLNEAGERCE SQFMEDRPHS KGLINRIMFT PWDDPCFITG GSDHAVVLWR DQCENNAWKP TLLHRDLHSS AVMGVTGMRH
501: NNHVLSCGDD RRFVGFDARE EKVTFKHRLD NRCTNIMPNP RDVNLVMVNT RQLDRQLRLY DVRLPQTELF SFGWKQESSE SQSALINQSW SPDGLHISSG
601: SADPVIHIFD IRYNAPSPSL SMKAHKKRVF KAEWHSSYPL LVSISSDLAI GIHKLW
101: ILGIAEFWNE GNKTKTANEN STPQSPSEME SLKLPSIILP PSFKRRASAT VRAEVNETTQ AQPMATRDYN IPREDTCGPE AKRPRSIPDE VVRETQDRDK
201: ETQPMATRGY DVPKEDKSGP EARRLRSIPD EVVRESQGRD NAAQPMATRD SNVPKEDKSG LDKRSRSIPN EVAQAPDNHT NKDLAKPRIR VSSNISQQGQ
301: QEKSEFRGHD ELIALIGRSS LRPTIEGRTA GMLPSCHTKR MRSLALSPSN RELFATSALD GAVHFWKLQS DRSTATLFKT VNRVAVDQKK WAEDIAWHPH
401: KNALFSVYTA DDGHPQISAI YLNEAGERCE SQFMEDRPHS KGLINRIMFT PWDDPCFITG GSDHAVVLWR DQCENNAWKP TLLHRDLHSS AVMGVTGMRH
501: NNHVLSCGDD RRFVGFDARE EKVTFKHRLD NRCTNIMPNP RDVNLVMVNT RQLDRQLRLY DVRLPQTELF SFGWKQESSE SQSALINQSW SPDGLHISSG
601: SADPVIHIFD IRYNAPSPSL SMKAHKKRVF KAEWHSSYPL LVSISSDLAI GIHKLW
Arabidopsis Description
At5g19920 [Source:UniProtKB/TrEMBL;Acc:Q8GX62]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.